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基于小鼠脂肪细胞的基因芯片数据鉴定与衰老相关的潜在关键 lncRNAs 和基因。

Identification of Potential Key lncRNAs and Genes Associated with Aging Based on Microarray Data of Adipocytes from Mice.

机构信息

Department of Geriatrics, The Second Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang 150086, China.

出版信息

Biomed Res Int. 2016;2016:9181702. doi: 10.1155/2016/9181702. Epub 2016 Dec 21.

Abstract

. This study aimed to screen potential crucial lncRNAs and genes involved in aging. . The data of 9 peripheral white adipocytes, respectively, taken from male C57BL/6J mice (6 months, 14 months, and 18 months of age) in GSE25905 were used in this study. Differentially time series expressed lncRNA genes (DE-lncRNAs) and mRNA genes (DEGs) were identified. After cluster analysis of lncRNAs expression pattern, target genes of DE-lncRNAs were predicted from the DEGs, and functional analysis for target genes was conducted. . A total of 8301 time series-related DEGs and 43 time series-related DE-lncRNAs were identified. Among them, 41 DE-lncRNAs targeted 1880 DEGs. The DEGs positively regulated by DE-lncRNAs were mainly related to the development of blood vessel and the pathways of cholesterol biosynthesis and elastic fibre formation. Furthermore, the DEGs negatively regulated by DE-lncRNAs were correlated with protein metabolism. . These DE-lncRNAs and DEGs are potentially involved in the process of aging.

摘要

. 本研究旨在筛选与衰老相关的潜在关键长链非编码 RNA(lncRNA)和基因。. 使用 GSE25905 中分别来自雄性 C57BL/6J 小鼠(6 个月、14 个月和 18 个月)的 9 个外周白色脂肪细胞的数据进行了本研究。鉴定出差异时间序列表达的 lncRNA 基因(DE-lncRNAs)和 mRNA 基因(DEGs)。对 lncRNA 表达模式进行聚类分析后,从 DEGs 中预测 DE-lncRNA 的靶基因,并对靶基因进行功能分析。. 共鉴定出 8301 个与时间序列相关的 DEGs 和 43 个与时间序列相关的 DE-lncRNAs。其中,41 个 DE-lncRNA 靶向 1880 个 DEG。由 DE-lncRNA 正向调控的 DEGs 主要与血管发育以及胆固醇生物合成和弹性纤维形成途径相关。此外,由 DE-lncRNA 负向调控的 DEGs 与蛋白质代谢相关。. 这些 DE-lncRNAs 和 DEGs 可能参与了衰老过程。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2786/5209599/0308e4093e2a/BMRI2016-9181702.001.jpg

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