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五福花科分支的16个微卫星标记的特征分析

Characterization of 16 microsatellite markers for the clade of (Adoxaceae).

作者信息

Barish Syndi, Arakaki Mónica, Edwards Erika J, Donoghue Michael J, Clement Wendy L

机构信息

Department of Biology, The College of New Jersey, 2000 Pennington Road, Ewing, New Jersey 08628 USA.

Facultad de Ciencias Biológicas and Museo de Historia Natural, Universidad Nacional Mayor de San Marcos, Av. Arenales 1256, Apdo. 14-0434, Lima 14, Peru.

出版信息

Appl Plant Sci. 2016 Dec 8;4(12). doi: 10.3732/apps.1600103. eCollection 2016 Dec.

Abstract

PREMISE OF THE STUDY

Microsatellite loci were isolated from four species of (Adoxaceae) to study population structure and assess species boundaries among morphologically similar South American species of the clade.

METHODS AND RESULTS

Using a microsatellite-enriched library and mining next-generation sequence data, 16 microsatellites were developed. Each locus was tested on two populations of and one population of . For nuclear loci, one to 13 alleles were recovered, expected heterozygosity ranged from 0 to 0.8975, Simpson diversity index ranged from 0.0167 to 1.000, and Shannon diversity index ranged from 0 to 2.3670 in a given population. For the mitochondrial locus, three to six alleles were recovered and unbiased haploid diversity values ranged from 0.756 to 0.853 in a given population.

CONCLUSIONS

The 16 microsatellite loci developed for the clade (, Adoxaceae) will inform investigations of population structure and species boundaries within this group.

摘要

研究前提

从五福花科的四个物种中分离出微卫星位点,以研究种群结构并评估南美洲五福花科进化枝中形态相似的物种之间的物种界限。

方法与结果

利用微卫星富集文库并挖掘二代测序数据,开发了16个微卫星。每个位点在两个接骨木属种群和一个荚蒾属种群上进行了测试。对于核基因座,在给定种群中,回收的等位基因数为1至13个,期望杂合度范围为0至0.8975,辛普森多样性指数范围为0.0167至1.000,香农多样性指数范围为0至2.3670。对于线粒体基因座,在给定种群中,回收的等位基因数为3至6个,无偏单倍体多样性值范围为0.756至0.853。

结论

为五福花科进化枝(接骨木属,五福花科)开发的16个微卫星位点将为该类群内的种群结构和物种界限研究提供信息。

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