Rumnieks Janis, Tars Kaspars
Biomedical Research and Study Center, Ratsupites 1, LV1067 Riga, Latvia.
Biomedical Research and Study Center, Ratsupites 1, LV1067 Riga, Latvia; Faculty of Biology, University of Latvia, Jelgavas 1, LV1004 Riga, Latvia.
J Mol Biol. 2017 Mar 10;429(5):688-696. doi: 10.1016/j.jmb.2017.01.012. Epub 2017 Jan 19.
Virions of the single-stranded RNA bacteriophages contain a single copy of the maturation protein, which is bound to the phage genome and is required for the infectivity of the particles. The maturation protein mediates the adsorption of the virion to bacterial pili and the subsequent release and penetration of the genome into the host cell. Here, we report a crystal structure of the maturation protein from bacteriophage Qβ. The protein has a bent, highly asymmetric shape and spans 110Å in length. Apart from small local substructures, the overall fold of the maturation protein does not resemble that of other known proteins. The protein is organized in two distinct regions, an α-helical part with a four-helix core, and a β stranded part that contains a seven-stranded sheet in the central part and a five-stranded sheet at the tip of the protein. The Qβ maturation protein has two distinct, positively charged areas at opposite sides of the α-helical part, which are involved in genomic RNA binding. The maturation protein binds to each of the surrounding coat protein dimers in the capsid differently, and the interaction is considerably weaker compared to coat protein interdimer contacts. The coat protein- or RNA-binding residues are not preserved among different ssRNA phage maturation proteins; instead, the distal end of the α-helical part is the most evolutionarily conserved, suggesting the importance of this region for maintaining the functionality of the protein.
单链RNA噬菌体的病毒粒子含有一份成熟蛋白,该蛋白与噬菌体基因组结合,是病毒粒子感染性所必需的。成熟蛋白介导病毒粒子吸附到细菌菌毛上,并随后将基因组释放并穿透进入宿主细胞。在此,我们报道了噬菌体Qβ成熟蛋白的晶体结构。该蛋白呈弯曲的、高度不对称的形状,长度为110Å。除了小的局部亚结构外,成熟蛋白的整体折叠与其他已知蛋白不同。该蛋白由两个不同的区域组成,一个是具有四螺旋核心的α螺旋部分,另一个是β链部分,其在中央部分包含一个七链片层,在蛋白末端包含一个五链片层。Qβ成熟蛋白在α螺旋部分的相对两侧有两个不同的带正电荷区域,它们参与基因组RNA的结合。成熟蛋白与衣壳中周围的每个衣壳蛋白二聚体结合方式不同,并且与衣壳蛋白二聚体间的接触相比,这种相互作用要弱得多。不同的单链RNA噬菌体成熟蛋白之间,衣壳蛋白或RNA结合残基并不保守;相反,α螺旋部分的远端是进化上最保守的,这表明该区域对于维持蛋白的功能很重要。