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人型支原体基因组在酵母中的克隆、稳定性及修饰

Cloning, Stability, and Modification of Mycoplasma hominis Genome in Yeast.

作者信息

Rideau Fabien, Le Roy Chloé, Descamps Elodie C T, Renaudin Hélène, Lartigue Carole, Bébéar Cécile

机构信息

Univ. Bordeaux , USC-EA3671 Mycoplasmal and Chlamydial Infections in Humans, F-33000 Bordeaux, France.

INRA , USC-EA3671 Mycoplasmal and Chlamydial Infections in Humans, F-33000 Bordeaux, France.

出版信息

ACS Synth Biol. 2017 May 19;6(5):891-901. doi: 10.1021/acssynbio.6b00379. Epub 2017 Feb 7.

Abstract

Mycoplasma hominis is a minimal human pathogen that is responsible for genital and neonatal infections. Despite many attempts, there is no efficient genetic tool to manipulate this bacterium, limiting most investigations of its pathogenicity and its uncommon energy metabolism that relies on arginine. The recent cloning and subsequent engineering of other mycoplasma genomes in yeast opens new possibilities for studies of the genomes of genetically intractable organisms. Here, we report the successful one-step cloning of the M. hominis PG21 genome in yeast using the transformation-associated recombination (TAR) cloning method. At low passages, the M. hominis genome cloned into yeast displayed a conserved size. However, after ∼60 generations in selective media, this stability was affected, and large degradation events were detected, raising questions regarding the stability of large heterologous DNA molecules cloned in yeast and the need to minimize host propagation. Taking these results into account, we selected early passage yeast clones and successfully modified the M. hominis PG21 genome using the CRISPR/Cas9 editing tool, available in Saccharomyces cerevisiae. Complete M. hominis PG21 genomes lacking the adhesion-related vaa gene were efficiently obtained.

摘要

人型支原体是一种致病性较弱的人类病原体,可导致生殖器和新生儿感染。尽管进行了多次尝试,但目前仍没有有效的基因工具来操纵这种细菌,这限制了对其致病性以及依赖精氨酸的独特能量代谢的大多数研究。最近在酵母中对其他支原体基因组进行克隆并随后进行工程改造,为研究遗传上难以处理的生物体的基因组开辟了新的可能性。在此,我们报告了使用转化相关重组(TAR)克隆方法在酵母中成功一步克隆人型支原体PG21基因组。在传代次数较低时,克隆到酵母中的人型支原体基因组显示出保守的大小。然而,在选择性培养基中传代约60代后,这种稳定性受到影响,检测到大量降解事件,这引发了关于克隆到酵母中的大型异源DNA分子稳定性以及尽量减少宿主繁殖必要性的问题。考虑到这些结果,我们选择了早期传代的酵母克隆,并使用酿酒酵母中可用的CRISPR/Cas9编辑工具成功修饰了人型支原体PG21基因组。有效地获得了缺失与黏附相关的vaa基因的完整人型支原体PG21基因组。

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