Dailey Harry A, Dailey Tamara A, Gerdes Svetlana, Jahn Dieter, Jahn Martina, O'Brian Mark R, Warren Martin J
Department of Microbiology, Department of Biochemistry and Molecular Biology, and Biomedical and Health Sciences Institute, University of Georgia, Athens, Georgia, USA
Department of Microbiology, Department of Biochemistry and Molecular Biology, and Biomedical and Health Sciences Institute, University of Georgia, Athens, Georgia, USA.
Microbiol Mol Biol Rev. 2017 Jan 25;81(1). doi: 10.1128/MMBR.00048-16. Print 2017 Mar.
The advent of heme during evolution allowed organisms possessing this compound to safely and efficiently carry out a variety of chemical reactions that otherwise were difficult or impossible. While it was long assumed that a single heme biosynthetic pathway existed in nature, over the past decade, it has become clear that there are three distinct pathways among prokaryotes, although all three pathways utilize a common initial core of three enzymes to produce the intermediate uroporphyrinogen III. The most ancient pathway and the only one found in the Archaea converts siroheme to protoheme via an oxygen-independent four-enzyme-step process. Bacteria utilize the initial core pathway but then add one additional common step to produce coproporphyrinogen III. Following this step, Gram-positive organisms oxidize coproporphyrinogen III to coproporphyrin III, insert iron to make coproheme, and finally decarboxylate coproheme to protoheme, whereas Gram-negative bacteria first decarboxylate coproporphyrinogen III to protoporphyrinogen IX and then oxidize this to protoporphyrin IX prior to metal insertion to make protoheme. In order to adapt to oxygen-deficient conditions, two steps in the bacterial pathways have multiple forms to accommodate oxidative reactions in an anaerobic environment. The regulation of these pathways reflects the diversity of bacterial metabolism. This diversity, along with the late recognition that three pathways exist, has significantly slowed advances in this field such that no single organism's heme synthesis pathway regulation is currently completely characterized.
在进化过程中,血红素的出现使拥有这种化合物的生物体能够安全、高效地进行各种化学反应,而这些反应在其他情况下则难以进行或无法进行。长期以来,人们一直认为自然界中存在单一的血红素生物合成途径,但在过去十年中,已经明确原核生物中存在三种不同的途径,尽管所有这三种途径都利用三种酶的共同初始核心来产生中间体尿卟啉原III。最古老的途径也是古菌中唯一发现的途径,通过一个不依赖氧气的四步酶促过程将 siro 血红素转化为原血红素。细菌利用初始核心途径,但随后添加一个额外的共同步骤来产生粪卟啉原III。在此步骤之后,革兰氏阳性生物体将粪卟啉原III氧化为粪卟啉III,插入铁以生成粪卟啉,最后将粪卟啉脱羧为原血红素,而革兰氏阴性细菌首先将粪卟啉原III脱羧为原卟啉原IX,然后在金属插入之前将其氧化为原卟啉IX以生成原血红素。为了适应缺氧条件,细菌途径中的两个步骤具有多种形式,以适应厌氧环境中的氧化反应。这些途径的调节反映了细菌代谢的多样性。这种多样性,以及对三种途径存在的较晚认识,显著减缓了该领域的进展,以至于目前没有一种生物体的血红素合成途径调节得到完全表征。