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沙生根瘤菌新种,从中国毛乌素沙漠的沙子中分离得到。

Rhizobium arenae sp. nov., isolated from the sand of Desert Mu Us, China.

作者信息

Zhang Shengnan, Yang Shanshan, Chen Wei, Chen Yong, Zhang Mingjuan, Zhou Xinai, Fan Guohua, Feng Fu Ying

机构信息

Institute for Applied and Environmental Microbiology, College of Life Science, Inner Mongolia Agricultural University, Huhhot 010018, PR China.

出版信息

Int J Syst Evol Microbiol. 2017 Jul;67(7):2098-2103. doi: 10.1099/ijsem.0.001810. Epub 2017 Jun 26.

Abstract

A Gram-strain-negative, rod-shaped, motile bacterium, designated MIM27T, was isolated from the sand of the Mu Us Desert, PR China. The strain could grow at 4-45 °C (optimum, 37 °C), at pH 6.6-9.0 (optimum, 8.0) and in the presence of 0-3 % (w/v) NaCl (optimum, 0 % in RNA liquid medium). The results of phylogenetic analysis of 16S rRNA gene sequences indicated that the strain represented a member of the genus Rhizobium, with the highest similarity (96.5 %) to Rhizobium pakistanense BN-19T. The results of analysis of the sequences of the nitrogen fixation gene nifH and three housekeeping genes, recA, atpD and glnII, also indicated that MIM27T was most closely related to the species of the genus Rhizobiumwith validly published names but the similarities were low (≤90.7 %). MIM27T did not form nodules on Pisum sativum, Vicia faba, Astragalus sinicus and Phaseolus vulgaris. The major respiratory quinone of MIM27T was Q-10. The genomic DNA G+C content was 59.8 mol%. Major fatty acids of MIM27T were summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c), C18 : 1ω7c 11-methyl, C16 : 0, summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c) and summed feature 2 (C12 : 0 aldehyde and/or unknown ECL 10.9525). On the basis of the physiological, chemotaxonomic and phenotypic data, MIM27T is suggested to represent a novel species of the genus Rhizobium, for which the name Rhizobium arenae sp. nov. is proposed. The type strain is MIM27T (=KCTC 52299T=MCCC 1K03215T).

摘要

从中国毛乌素沙漠的沙子中分离出一株革兰氏阴性、杆状、具运动性的细菌,命名为MIM27T。该菌株能在4-45 °C(最适温度37 °C)、pH 6.6-9.0(最适pH 8.0)以及0-3 %(w/v)NaCl(RNA液体培养基中最适为0 %)条件下生长。16S rRNA基因序列的系统发育分析结果表明,该菌株属于根瘤菌属的一个成员,与巴基斯坦根瘤菌BN-19T的相似度最高(96.5 %)。固氮基因nifH以及三个管家基因recA、atpD和glnII的序列分析结果也表明,MIM27T与已有效发表名称的根瘤菌属物种关系最为密切,但相似度较低(≤90.7 %)。MIM27T在豌豆、蚕豆、紫云英和菜豆上不形成根瘤。MIM27T的主要呼吸醌为Q-10。基因组DNA的G+C含量为59.8 mol%。MIM27T的主要脂肪酸为特征性总和8(C18 : 1ω7c和/或C18 : 1ω6c)、C18 : 1ω7c 11-甲基、C16 : 0、特征性总和3(C16 : 1ω7c和/或C16 : 1ω6c)以及特征性总和2(C12 : 0醛和/或未知ECL 10.9525)。基于生理、化学分类和表型数据,建议MIM27T代表根瘤菌属的一个新物种,为此提出新名称沙漠根瘤菌(Rhizobium arenae sp. nov.)。模式菌株为MIM27T(=KCTC 52299T=MCCC 1K03215T)。

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