Grasse Wolfgang, Spring Otmar
Institute of Botany, University of Hohenheim, Garbenstr. 30, 70599, Stuttgart, Germany.
Arch Virol. 2017 May;162(5):1319-1324. doi: 10.1007/s00705-017-3243-2. Epub 2017 Feb 2.
Plasmopara halstedii virus (PhV) is one of the few characterized oomycete viruses. Although it is fully sequenced and well-studied in its genetic diversity, the exact classification and phylogenetic relationships of PhV remain uncertain. The only known virus with characteristics similar to PhV is the Sclerophthora macrospora Virus A (SmV-A). Both viruses infect obligate biotrophic oomycetes. While RNA-dependent RNA polymerases (RdRp) of oomycetes viruses have high similarity to the corresponding enzymes from viruses classified in the family Nodaviridae, the coat proteins (CP) seem to be completely different from those of other viruses of this family. In contrast, the coat proteins of PhV and SmV-A have high similarity to viruses classified in the Tombusviridae, Circoviridae and a new group of hybrid DNA-RNA viruses (so-called chimeric viruses or cruciviruses). Because phylogenetic analyses based on the sequences of either RdRp or CP result in different affinities, an alternative, genome-based approach combining the sequences of both proteins was used. This analysis placed the two oomycete viruses together with Tombunodavirus UC1 in a new, independent group between families Nodaviridae and Tombusviridae.
哈氏霜霉病毒(PhV)是少数已被鉴定的卵菌纲病毒之一。尽管它已完成全基因组测序且对其遗传多样性进行了充分研究,但PhV的确切分类和系统发育关系仍不明确。唯一已知的具有与PhV相似特征的病毒是大孢硬霜霉病毒A(SmV-A)。这两种病毒都感染专性活体营养型卵菌。虽然卵菌纲病毒的RNA依赖RNA聚合酶(RdRp)与诺达病毒科分类的病毒中的相应酶具有高度相似性,但衣壳蛋白(CP)似乎与该科的其他病毒完全不同。相比之下,PhV和SmV-A的衣壳蛋白与番茄丛矮病毒科、圆环病毒科以及一组新的DNA-RNA杂交病毒(所谓的嵌合病毒或十字病毒)分类的病毒具有高度相似性。由于基于RdRp或CP序列的系统发育分析产生了不同的亲缘关系,因此采用了一种基于基因组的替代方法,将两种蛋白质的序列结合起来。该分析将这两种卵菌纲病毒与番茄丛矮诺达病毒UC1一起置于诺达病毒科和番茄丛矮病毒科之间的一个新的独立类群中。