Raco Milica, Vainio Eeva J, Sutela Suvi, Eichmeier Aleš, Hakalová Eliška, Jung Thomas, Botella Leticia
Phytophthora Research Centre, Department of Forest Protection and Wildlife Management, Faculty of Forestry and Wood Technology, Mendel University in Brno, Brno, Czechia.
Natural Resources Institute Finland (Luke), Helsinki, Finland.
Front Microbiol. 2022 Jun 16;13:911474. doi: 10.3389/fmicb.2022.911474. eCollection 2022.
, an oomycete pathogen causing root and trunk rot of different tree species in Asia, was shown to harbor a rich diversity of novel viruses from different families. Four isolates collected from in a semi-natural montane forest site in Vietnam were investigated for viral presence by traditional and next-generation sequencing (NGS) techniques, i.e., double-stranded RNA (dsRNA) extraction and high-throughput sequencing (HTS) of small RNAs (sRNAs) and total RNA. Genome organization, sequence similarity, and phylogenetic analyses indicated that the viruses were related to members of the order and families , , , and the proposed family "Fusagraviridae." The study describes six novel viruses: Phytophthora castaneae RNA virus 1-5 (PcaRV1-5) and Phytophthora castaneae negative-stranded RNA virus 1 (PcaNSRV1). All six viruses were detected by sRNA sequencing, which demonstrates an active RNA interference (RNAi) system targeting viruses in . To our knowledge, this is the first report of viruses in and the whole major Clade 5, as well as of the activity of an RNAi mechanism targeting viral genomes among Clade 5 species. PcaRV1 is the first megabirnavirus described in oomycetes and the genus .
[病原体名称]是一种卵菌病原体,在亚洲可导致不同树种的根腐病和树干腐烂病,已证明其携带来自不同科的丰富多样的新型病毒。通过传统和新一代测序(NGS)技术,即双链RNA(dsRNA)提取以及小RNA(sRNA)和总RNA的高通量测序(HTS),对从越南一个半天然山地森林地点的[样本来源]收集的4个分离株进行了病毒检测。基因组组织、序列相似性和系统发育分析表明,这些病毒与[病毒目名称]以及[病毒科名称1]、[病毒科名称2]、[病毒科名称3]、[病毒科名称4]和拟议的“Fusagraviridae”科的成员有关。该研究描述了六种新型病毒:栗疫霉RNA病毒1 - 5(PcaRV1 - 5)和栗疫霉负链RNA病毒1(PcaNSRV1)。所有六种病毒均通过sRNA测序检测到,这表明在[病原体名称]中存在针对病毒的活跃RNA干扰(RNAi)系统。据我们所知,这是关于[病原体名称]以及整个[病原体所属分类]主要进化枝5中病毒的首次报告,也是关于进化枝5物种中针对病毒基因组的RNAi机制活性的首次报告。PcaRV1是在卵菌和[属名称]中描述的第一种巨型双RNA病毒。