De Schutter Joris W, Morrison James P, Morrison Michael J, Ciulli Alessio, Imperiali Barbara
Department of Chemistry, Massachusetts Institute of Technology , 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, United States.
Division of Biological Chemistry and Drug Discovery, School of Life Sciences, University of Dundee , DD1 5EH Dundee, Scotland.
J Med Chem. 2017 Mar 9;60(5):2099-2118. doi: 10.1021/acs.jmedchem.6b01869. Epub 2017 Feb 22.
The glycoproteins of selected microbial pathogens often include highly modified carbohydrates such as 2,4-diacetamidobacillosamine (diNAcBac). These glycoconjugates are involved in host-cell interactions and may be associated with the virulence of medically significant Gram-negative bacteria. In light of genetic studies demonstrating the attenuated virulence of bacterial strains in which modified carbohydrate biosynthesis enzymes have been knocked out, we are developing small molecule inhibitors of selected enzymes as tools to evaluate whether such compounds modulate virulence. We performed fragment-based and high-throughput screens against an amino-sugar acetyltransferase enzyme, PglD, involved in biosynthesis of UDP-diNAcBac in Campylobacter jejuni. Herein we report optimization of the hits into potent small molecule inhibitors (IC < 300 nM). Biophysical characterization shows that the best inhibitors are competitive with acetyl coenzyme A and an X-ray cocrystal structure reveals that binding is biased toward occupation of the adenine subpocket of the AcCoA binding site by an aromatic ring.
选定微生物病原体的糖蛋白通常包含高度修饰的碳水化合物,如2,4-二乙酰氨基杆菌糖胺(diNAcBac)。这些糖缀合物参与宿主细胞相互作用,可能与具有医学意义的革兰氏阴性菌的毒力有关。鉴于基因研究表明,敲除修饰碳水化合物生物合成酶的细菌菌株毒力减弱,我们正在开发选定酶的小分子抑制剂,作为评估此类化合物是否调节毒力的工具。我们针对空肠弯曲菌中参与UDP-diNAcBac生物合成的氨基糖乙酰转移酶PglD进行了基于片段和高通量筛选。在此,我们报告了将命中化合物优化为强效小分子抑制剂(IC<300 nM)。生物物理表征表明,最佳抑制剂与乙酰辅酶A具有竞争性,X射线共晶体结构显示,结合偏向于一个芳香环占据AcCoA结合位点的腺嘌呤亚口袋。