Amador Davi H T, Sambrano Julio R, Gargano Ricardo, de Macedo Luiz Guilherme M
Faculdade de Biotecnologia, Instituto de Ciências Biológicas, Universidade Federal do Pará (UFPA), Belém, PA, 66075-110, Brazil.
Departamento de Matemática, Universidade Estadual Paulista (UNESP), PO Box 473, Bauru, SP, 17030-360, Brazil.
J Mol Model. 2017 Mar;23(3):69. doi: 10.1007/s00894-017-3252-9. Epub 2017 Feb 14.
The aqueous solvation of Th and Np in the IV oxidation state was examined using cluster models generated by Monte Carlo simulations and density functional theory embedded within the COSMO continuum model to approximate the effect of bulk water. Our results suggest that the coordination number (CN) for both Th(IV) and NP(IV) should be 9, in accordance to some experimental and theoretical results from the literature. The structural values for average oxygen-metal distances are within 0.01 Å compared to experimental data, and also within the experimental error. The calculated ΔG are in very good agreement with experimental reported values, with deviations at CN = 9 lower than 1% for both Th(IV) and Np(IV). The hydrolysis constants are also in very good agreement with experimental values. Finally, this [corrected] methodology has the advantage of using a GGA functional (BP86) that not only makes the calculations more affordable computationally than hybrid functional or ab initio molecular dynamics simulations (Car-Parrinello) calculations, but also opens the perspective to use resolution of identity (RI) calculations for more extended systems.
利用蒙特卡罗模拟生成的团簇模型以及嵌入COSMO连续介质模型中的密度泛函理论,研究了处于四价氧化态的钍(Th)和镎(Np)的水合作用,以近似本体水的影响。我们的结果表明,根据文献中的一些实验和理论结果,Th(IV)和Np(IV)的配位数(CN)均应为9。平均氧-金属距离的结构值与实验数据相比在0.01 Å以内,且也在实验误差范围内。计算得到的ΔG与实验报道值非常吻合,在CN = 9时,Th(IV)和Np(IV)的偏差均低于1%。水解常数也与实验值非常吻合。最后,这种[修正后的]方法的优点是使用了广义梯度近似(GGA)泛函(BP86),这不仅使计算在计算上比杂化泛函或从头算分子动力学模拟(Car-Parrinello)计算更经济实惠,而且还为使用分辨率恒等(RI)计算来处理更大的体系开辟了前景。