• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

硫代磷酸酯 DNA 的 ROS 抗性的机制研究。

Mechanistic Investigation on ROS Resistance of Phosphorothioated DNA.

机构信息

State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic &Developmental Sciences, MOE-LSB and MOE-LSC, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, China.

出版信息

Sci Rep. 2017 Feb 20;7:42823. doi: 10.1038/srep42823.

DOI:10.1038/srep42823
PMID:28216673
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5316992/
Abstract

Phosphorothioated DNA (PT-DNA) exhibits a mild anti-oxidant property both in vivo and in vitro. It was found that 8-OHdG and ROS levels were significantly lower in dnd+ (i.e. S) E. coli., compared to a dnd- (i.e. S) strain. Furthermore, different from traditional antioxidants, phosphorothioate compound presents an unexpectedly high capacity to quench hydroxyl radical. Oxidative product analysis by liquid chromatography-mass spectrometry and quantum mechanistic computation supported its unique anti-oxidant characteristic of the hydroxyl selectivity: phosphorothioate donates an electron to either hydroxyl radical or guanine radical derived from hydroxyl radical, leading to a PS radical; a complex of PS radical and OH (i.e. the reductive product of hydroxyl radical) releases a highly reductive HS radical, which scavenges more equivalents of oxidants in the way to high-covalent sulphur compounds such as sulphur, sulphite and sulphate. The PS-PO conversion (PS and PO denote phosphorus-sulphur and phosphorus-oxygen compounds, respectively) made a switch of extremely oxidative OH to highly reductive HS species, endowing PT-DNA with the observed high capacity in hydroxyl-radical neutralization. This plausible mechanism provides partial rationale as to why bacteria develop the resource-demanding PT modification on guanine-neighboring phosphates in genome.

摘要

硫代磷酸酯 DNA(PT-DNA)在体内和体外均表现出轻微的抗氧化特性。与 dnd-(即 S)菌株相比,发现 dnd+(即 S)大肠杆菌中的 8-OHdG 和 ROS 水平显著降低。此外,与传统抗氧化剂不同,硫代磷酸酯化合物出乎意料地具有淬灭羟基自由基的高能力。通过液相色谱-质谱和量子力学计算对氧化产物进行分析,支持其独特的羟基选择性抗氧化特性:硫代磷酸酯向羟基自由基或源自羟基自由基的鸟嘌呤自由基提供一个电子,导致 PS 自由基;PS 自由基和 OH(即羟基自由基的还原产物)的复合物释放出高度还原的 HS 自由基,以高共价硫化合物(如硫、亚硫酸盐和硫酸盐)的方式清除更多氧化剂当量。PS-PO 转换(PS 和 PO 分别表示磷-硫和磷-氧化合物)使极氧化的 OH 转换为高度还原的 HS 物种,这赋予了 PT-DNA 观察到的羟基自由基中和的高能力。这种合理的机制部分解释了为什么细菌在基因组中鸟嘌呤邻近磷酸上发展出这种资源需求高的 PT 修饰。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c63d/5316992/5b38c49f21ac/srep42823-f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c63d/5316992/e336b32acbbb/srep42823-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c63d/5316992/b4fe75d3eb7c/srep42823-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c63d/5316992/ee1e736e283a/srep42823-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c63d/5316992/84ff3092a813/srep42823-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c63d/5316992/0b989147e8d1/srep42823-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c63d/5316992/c04e9b088484/srep42823-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c63d/5316992/5b38c49f21ac/srep42823-f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c63d/5316992/e336b32acbbb/srep42823-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c63d/5316992/b4fe75d3eb7c/srep42823-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c63d/5316992/ee1e736e283a/srep42823-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c63d/5316992/84ff3092a813/srep42823-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c63d/5316992/0b989147e8d1/srep42823-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c63d/5316992/c04e9b088484/srep42823-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c63d/5316992/5b38c49f21ac/srep42823-f7.jpg

相似文献

1
Mechanistic Investigation on ROS Resistance of Phosphorothioated DNA.硫代磷酸酯 DNA 的 ROS 抗性的机制研究。
Sci Rep. 2017 Feb 20;7:42823. doi: 10.1038/srep42823.
2
Self-Cyclizing Antioxidants to Prevent DNA Damage Caused by Hydroxyl Radical.用于预防羟基自由基引起的DNA损伤的自环化抗氧化剂。
Chembiochem. 2017 Oct 18;18(20):2007-2011. doi: 10.1002/cbic.201700341. Epub 2017 Aug 30.
3
Lycopene-induced hydroxyl radical causes oxidative DNA damage in Escherichia coli.番茄红素诱导产生的羟基自由基会导致大肠杆菌中的DNA发生氧化损伤。
J Microbiol Biotechnol. 2014 Sep;24(9):1232-7. doi: 10.4014/jmb.1406.06009.
4
[Free oxygen radiacals and kidney diseases--part I].[游离氧自由基与肾脏疾病——第一部分]
Med Pregl. 2000 Sep-Oct;53(9-10):463-74.
5
Defense Mechanism of Phosphorothioated DNA under Peroxynitrite-Mediated Oxidative Stress.过亚硝酸酯介导的氧化应激下硫代磷酸化 DNA 的防御机制。
ACS Chem Biol. 2020 Sep 18;15(9):2558-2567. doi: 10.1021/acschembio.0c00591. Epub 2020 Sep 3.
6
Comparative study of the formation of oxidative damage marker 8-hydroxy-2'-deoxyguanosine (8-OHdG) adduct from the nucleoside 2'-deoxyguanosine by transition metals and suspensions of particulate matter in relation to metal content and redox reactivity.关于过渡金属和颗粒物悬浮液从核苷2'-脱氧鸟苷形成氧化损伤标志物8-羟基-2'-脱氧鸟苷(8-OHdG)加合物的比较研究,涉及金属含量和氧化还原反应活性。
Free Radic Res. 2005 Oct;39(10):1071-81. doi: 10.1080/10715760500188671.
7
Oxidatively generated base damage to cellular DNA by hydroxyl radical and one-electron oxidants: similarities and differences.羟自由基和单电子氧化剂对细胞 DNA 的氧化生成碱基损伤:相似性和差异性。
Arch Biochem Biophys. 2014 Sep 1;557:47-54. doi: 10.1016/j.abb.2014.05.001. Epub 2014 May 10.
8
Quantitative mapping of DNA phosphorothioatome reveals phosphorothioate heterogeneity of low modification frequency.定量分析 DNA 硫代磷酸酯图谱揭示低修饰频率下的硫代磷酸酯不均一性。
PLoS Genet. 2019 Apr 1;15(4):e1008026. doi: 10.1371/journal.pgen.1008026. eCollection 2019 Apr.
9
Dietary antioxidants fail in protection against oxidative genetic damage in in vitro evaluation.
Biosci Biotechnol Biochem. 2000 Nov;64(11):2395-401. doi: 10.1271/bbb.64.2395.
10
Suplatast tosilate protects the lung against hyperoxic lung injury by scavenging hydroxyl radicals.托西酸舒普拉泰通过清除羟自由基来保护肺免受高氧性肺损伤。
Free Radic Biol Med. 2017 May;106:1-9. doi: 10.1016/j.freeradbiomed.2017.02.014. Epub 2017 Feb 7.

引用本文的文献

1
Antimicrobial resistance and mechanisms of epigenetic regulation.抗微生物耐药性和表观遗传调控机制。
Front Cell Infect Microbiol. 2023 Jun 14;13:1199646. doi: 10.3389/fcimb.2023.1199646. eCollection 2023.
2
The DNA Phosphorothioation Restriction-Modification System Influences the Antimicrobial Resistance of Pathogenic Bacteria.DNA 硫代磷酸化限制修饰系统影响致病菌的抗菌耐药性。
Microbiol Spectr. 2023 Feb 14;11(1):e0350922. doi: 10.1128/spectrum.03509-22. Epub 2023 Jan 4.
3
High-throughput sequencing of EcoWI restriction fragments maps the genome-wide landscape of phosphorothioate modification at base resolution.

本文引用的文献

1
DNA Phosphorothioate Modification Plays a Role in Peroxides Resistance in Streptomyces lividans.DNA硫代磷酸酯修饰在淡紫链霉菌的过氧化物抗性中起作用。
Front Microbiol. 2016 Aug 31;7:1380. doi: 10.3389/fmicb.2016.01380. eCollection 2016.
2
Structural investigation into physiological DNA phosphorothioate modification.生理DNA硫代磷酸酯修饰的结构研究。
Sci Rep. 2016 May 12;6:25737. doi: 10.1038/srep25737.
3
DndEi Exhibits Helicase Activity Essential for DNA Phosphorothioate Modification and ATPase Activity Strongly Stimulated by DNA Substrate with a GAAC/GTTC Motif.
高通量测序 EcoWI 限制片段绘制了碱基分辨率下硫代磷酸修饰的全基因组图谱。
PLoS Genet. 2022 Sep 19;18(9):e1010389. doi: 10.1371/journal.pgen.1010389. eCollection 2022 Sep.
4
Origin of iodine preferential attack at sulfur in phosphorothioate and subsequent P-O or P-S bond dissociation.碘优先攻击硫代磷酸酯中的硫原子,随后发生 P-O 或 P-S 键断裂。
Proc Natl Acad Sci U S A. 2022 Apr 26;119(17):e2119032119. doi: 10.1073/pnas.2119032119. Epub 2022 Apr 19.
5
Phosphorothioate-DNA bacterial diet reduces the ROS levels in C. elegans while improving locomotion and longevity.含硫代磷酸酯的 DNA 细菌饮食可降低秀丽隐杆线虫中的 ROS 水平,同时改善运动能力和寿命。
Commun Biol. 2021 Nov 25;4(1):1335. doi: 10.1038/s42003-021-02863-y.
6
Phosphorothioated DNA Is Shielded from Oxidative Damage.硫代磷酸酯 DNA 可免受氧化损伤。
Appl Environ Microbiol. 2019 Apr 4;85(8). doi: 10.1128/AEM.00104-19. Print 2019 Apr 15.
7
Complete Genome Sequence of the Arcobacter marinus Type Strain JCM 15502.海栖弓形杆菌模式菌株JCM 15502的全基因组序列
Microbiol Resour Announc. 2018 Oct 25;7(16). doi: 10.1128/MRA.01269-18. eCollection 2018 Oct.
8
Structural basis for the recognition of sulfur in phosphorothioated DNA.硫代磷酸酯 DNA 识别的结构基础。
Nat Commun. 2018 Nov 8;9(1):4689. doi: 10.1038/s41467-018-07093-1.
9
DNA phosphorothioate modification-a new multi-functional epigenetic system in bacteria.DNA 硫代磷酸酯修饰——细菌中新的多功能表观遗传系统。
FEMS Microbiol Rev. 2019 Mar 1;43(2):109-122. doi: 10.1093/femsre/fuy036.
DndEi表现出对DNA硫代磷酸酯修饰至关重要的解旋酶活性,以及被具有GAAC/GTTC基序的DNA底物强烈刺激的ATP酶活性。
J Biol Chem. 2016 Jan 15;291(3):1492-500. doi: 10.1074/jbc.M115.694018. Epub 2015 Dec 2.
4
Interactions of Dnd proteins involved in bacterial DNA phosphorothioate modification.参与细菌DNA硫代磷酸酯修饰的Dnd蛋白的相互作用。
Front Microbiol. 2015 Oct 20;6:1139. doi: 10.3389/fmicb.2015.01139. eCollection 2015.
5
The influence of phosphorothioate on charge migration in single and double stranded DNA: a theoretical approach.硫代磷酸酯对单链和双链DNA中电荷迁移的影响:一种理论方法。
Phys Chem Chem Phys. 2015 Sep 7;17(33):21507-16. doi: 10.1039/c5cp01382h. Epub 2015 Jul 29.
6
In vitro analysis of phosphorothioate modification of DNA reveals substrate recognition by a multiprotein complex.DNA硫代磷酸酯修饰的体外分析揭示了多蛋白复合物对底物的识别。
Sci Rep. 2015 Jul 27;5:12513. doi: 10.1038/srep12513.
7
Regulation of DNA phosphorothioate modification in Salmonella enterica by DndB.DndB对肠炎沙门氏菌中DNA硫代磷酸酯修饰的调控。
Sci Rep. 2015 Jul 20;5:12368. doi: 10.1038/srep12368.
8
Theoretical study on the relationship between Rp-phosphorothioation and base-step in S-DNA: based on energetic and structural analysis.Rp-膦酸硫酯化与 S-DNA 中碱基步的关系的理论研究:基于能量和结构分析。
J Phys Chem B. 2015 Jan 15;119(2):474-81. doi: 10.1021/jp511359e. Epub 2014 Dec 31.
9
DNA phosphorothioate modifications influence the global transcriptional response and protect DNA from double-stranded breaks.DNA硫代磷酸酯修饰影响整体转录反应并保护DNA免受双链断裂。
Sci Rep. 2014 Oct 16;4:6642. doi: 10.1038/srep06642.
10
Pathological phenotypes and in vivo DNA cleavage by unrestrained activity of a phosphorothioate-based restriction system in Salmonella.基于硫代磷酸酯的限制系统在沙门氏菌中不受限制的活性所导致的病理表型和体内DNA切割
Mol Microbiol. 2014 Aug;93(4):776-85. doi: 10.1111/mmi.12692. Epub 2014 Jul 23.