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前沿蛋白质组学、转录组学和生物信息学相结合揭示了四种芋螺属物种毒素在序列、翻译后修饰及预期药理活性方面的多样性。

Diversity in sequences, post-translational modifications and expected pharmacological activities of toxins from four Conus species revealed by the combination of cutting-edge proteomics, transcriptomics and bioinformatics.

作者信息

Degueldre Michel, Verdenaud Marion, Legarda Garikoitz, Minambres Rebeca, Zuniga Sheila, Leblanc Mathieu, Gilles Nicolas, Ducancel Frederic, De Pauw Edwin, Quinton Loic

机构信息

Laboratory of Mass Spectrometry, MolSys, ULg, Liege, Belgium.

iBiTEc S/SPI Antibody Eng. for Health, CEA, Gif-sur-Yvette, France.

出版信息

Toxicon. 2017 May;130:116-125. doi: 10.1016/j.toxicon.2017.02.014. Epub 2017 Feb 20.

Abstract

Venomous animals have developed a huge arsenal of reticulated peptides for defense and predation. Based on various scaffolds, they represent a colossal pharmacological diversity, making them top candidates for the development of innovative drugs. Instead of relying on the classical, low-throughput bioassay-guided approach to identify innovative bioactive peptides, this work exploits a recent paradigm to access to venom diversity. This strategy bypasses the classical approach by combining high-throughput transcriptomics, proteomics and bioinformatics cutting-edge technologies to generate reliable peptide sequences. The strategy employed to generate hundreds of reliable sequences from Conus venoms is deeply described. The study led to the discovery of (i) conotoxins that belong to known pharmacological families targeting various GPCRs or ion-gated channels, and (ii) new families of conotoxins, never described to date. It also focusses on the diversity of genes, sequences, folds, and PTM's provided by such species.

摘要

有毒动物已经开发出大量用于防御和捕食的网状肽。基于各种支架,它们呈现出巨大的药理学多样性,使其成为创新药物开发的首选候选物。这项工作并非依赖传统的低通量生物测定引导方法来鉴定创新的生物活性肽,而是利用一种最新的模式来获取毒液多样性。该策略通过结合高通量转录组学、蛋白质组学和生物信息学前沿技术来绕过传统方法,以生成可靠的肽序列。文中深入描述了从芋螺毒液中生成数百个可靠序列所采用的策略。该研究导致发现了:(i)属于已知药理学家族、靶向各种GPCR或离子门控通道的芋螺毒素,以及(ii)迄今为止从未描述过的新芋螺毒素家族。它还关注此类物种所提供的基因、序列、折叠和翻译后修饰的多样性。

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