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南部非洲的人口结构与传染病风险

Population structure and infectious disease risk in southern Africa.

作者信息

Uren Caitlin, Möller Marlo, van Helden Paul D, Henn Brenna M, Hoal Eileen G

机构信息

SA MRC Centre for TB Research, DST/NRF Centre of Excellence for Biomedical Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medical and Health Sciences, Stellenbosch University, Tygerberg, Parow, 7500, South Africa.

Department of Ecology and Evolution, Stony Brook University, Stony Brook, NY, 11794, USA.

出版信息

Mol Genet Genomics. 2017 Jun;292(3):499-509. doi: 10.1007/s00438-017-1296-2. Epub 2017 Feb 22.

DOI:10.1007/s00438-017-1296-2
PMID:28229227
Abstract

The KhoeSan populations are the earliest known indigenous inhabitants of southern Africa. The relatively recent expansion of Bantu-speaking agropastoralists, as well as European colonial settlement along the south-west coast, dramatically changed patterns of genetic diversity in a region which had been largely isolated for thousands of years. Owing to this unique history, population structure in southern Africa reflects both the underlying KhoeSan genetic diversity as well as differential recent admixture. This population structure has a wide range of biomedical and sociocultural implications; such as changes in disease risk profiles. Here, we consolidate information from various population genetic studies that characterize admixture patterns in southern Africa with an aim to better understand differences in adverse disease phenotypes observed among groups. Our review confirms that ancestry has a direct impact on an individual's immune response to infectious diseases. In addition, we emphasize the importance of collaborative research, especially for populations in southern Africa that have a high incidence of potentially fatal infectious diseases such as HIV and tuberculosis.

摘要

科伊桑人群是已知最早居住在南部非洲的原住民。相对较近时期讲班图语的农牧民的扩张,以及欧洲人在西南海岸的殖民定居,极大地改变了一个在数千年里基本处于隔离状态的地区的遗传多样性模式。由于这一独特历史,南部非洲的人口结构既反映了科伊桑人潜在的遗传多样性,也反映了近期不同的混合情况。这种人口结构具有广泛的生物医学和社会文化影响;比如疾病风险状况的变化。在此,我们整合了各种群体遗传学研究的信息,这些研究描绘了南部非洲的混合模式,旨在更好地理解不同群体中观察到的不良疾病表型差异。我们的综述证实,血统对个体针对传染病的免疫反应有直接影响。此外,我们强调合作研究的重要性,特别是对于南部非洲那些潜在致命传染病(如艾滋病毒和结核病)发病率很高的人群。

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本文引用的文献

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Complex Ancient Genetic Structure and Cultural Transitions in Southern African Populations.南部非洲人群复杂的古代基因结构与文化变迁
Genetics. 2017 Jan;205(1):303-316. doi: 10.1534/genetics.116.189209. Epub 2016 Nov 11.
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The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.西蒙斯基因组多样性项目:来自142个不同群体的300个基因组。
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Fine-Scale Human Population Structure in Southern Africa Reflects Ecogeographic Boundaries.
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The recombination landscape of the Khoe-San likely represents the upper limits of recombination divergence in humans.科伊桑人的重组景观可能代表了人类重组分歧的上限。
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Local Ancestry Adjusted Allelic Association Analysis Robustly Captures Tuberculosis Susceptibility Loci.本地血统调整后的等位基因关联分析稳健地捕获结核病易感位点。
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Diabetes Risk Data Mining Method Based on Electronic Medical Record Analysis.基于电子病历分析的糖尿病风险数据挖掘方法。
J Healthc Eng. 2021 Mar 4;2021:6678526. doi: 10.1155/2021/6678526. eCollection 2021.
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Inferring recombination patterns in African populations.推断非洲人群中的重组模式。
Hum Mol Genet. 2021 Apr 26;30(R1):R11-R16. doi: 10.1093/hmg/ddab020.
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Bantu-speaker migration and admixture in southern Africa.班图语族群在南非的迁移和融合。
Hum Mol Genet. 2021 Apr 26;30(R1):R56-R63. doi: 10.1093/hmg/ddaa274.
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4
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