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Annu Rev Genet. 2016 Nov 23;50:317-327. doi: 10.1146/annurev-genet-120215-035120.
2
Analysis of allelic expression patterns in clonal somatic cells by single-cell RNA-seq.通过单细胞RNA测序分析克隆体细胞中的等位基因表达模式。
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Genes with monoallelic expression contribute disproportionately to genetic diversity in humans.单等位基因表达的基因对人类遗传多样性的贡献不成比例。
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Noncanonical Genomic Imprinting Effects in Offspring.后代中的非经典基因组印记效应。
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Quantitative and functional interrogation of parent-of-origin allelic expression biases in the brain.对大脑中亲本来源等位基因表达偏差进行定量和功能研究。
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Recessive DEAF1 mutation associates with autism, intellectual disability, basal ganglia dysfunction and epilepsy.隐性DEAF1突变与自闭症、智力残疾、基底神经节功能障碍和癫痫有关。
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Analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance.对高度分化的小鼠杂交后代中等位基因特异性基因表达的分析揭示了普遍存在的等位基因失衡。
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Nature. 2015 Feb 19;518(7539):350-354. doi: 10.1038/nature14217.

多种非遗传、等位基因特异性表达效应在哺乳动物大脑的细胞水平塑造遗传结构。

Diverse Non-genetic, Allele-Specific Expression Effects Shape Genetic Architecture at the Cellular Level in the Mammalian Brain.

作者信息

Huang Wei-Chao, Ferris Elliott, Cheng Tong, Hörndli Cornelia Stacher, Gleason Kelly, Tamminga Carol, Wagner Janice D, Boucher Kenneth M, Christian Jan L, Gregg Christopher

机构信息

Departments of Neurobiology & Anatomy, University of Utah School of Medicine, Salt Lake City, UT 84112, USA.

Department of Psychiatry, UT Southwestern, Dallas, TX 75390-9127, USA.

出版信息

Neuron. 2017 Mar 8;93(5):1094-1109.e7. doi: 10.1016/j.neuron.2017.01.033. Epub 2017 Feb 23.

DOI:10.1016/j.neuron.2017.01.033
PMID:28238550
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5774018/
Abstract

Interactions between genetic and epigenetic effects shape brain function, behavior, and the risk for mental illness. Random X inactivation and genomic imprinting are epigenetic allelic effects that are well known to influence genetic architecture and disease risk. Less is known about the nature, prevalence, and conservation of other potential epigenetic allelic effects in vivo in the mouse and primate brain. Here we devise genomics, in situ hybridization, and mouse genetics strategies to uncover diverse allelic effects in the brain that are not caused by imprinting or genetic variation. We found allelic effects that are developmental stage and cell type specific, that are prevalent in the neonatal brain, and that cause mosaics of monoallelic brain cells that differentially express wild-type and mutant alleles for heterozygous mutations. Finally, we show that diverse non-genetic allelic effects that impact mental illness risk genes exist in the macaque and human brain. Our findings have potential implications for mammalian brain genetics. VIDEO ABSTRACT.

摘要

基因效应与表观遗传效应之间的相互作用塑造了脑功能、行为以及精神疾病风险。随机X染色体失活和基因组印记是表观遗传等位基因效应,它们对遗传结构和疾病风险的影响广为人知。而对于小鼠和灵长类动物大脑中其他潜在表观遗传等位基因效应的性质、普遍性和保守性,我们了解得较少。在此,我们设计了基因组学、原位杂交和小鼠遗传学策略,以揭示大脑中并非由印记或基因变异引起的多种等位基因效应。我们发现了等位基因效应具有发育阶段和细胞类型特异性,在新生大脑中普遍存在,并且会导致单等位脑细胞镶嵌体,这些镶嵌体对于杂合突变会差异表达野生型和突变等位基因。最后,我们表明猕猴和人类大脑中存在影响精神疾病风险基因的多种非遗传等位基因效应。我们的发现对哺乳动物脑遗传学具有潜在意义。视频摘要。