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使用磺胺甲恶唑与单环萜类化合物开发抗菌缀合物:一种基于系统药物化学的计算方法。

Development of antibacterial conjugates using sulfamethoxazole with monocyclic terpenes: A systematic medicinal chemistry based computational approach.

作者信息

Swain Shasank S, Paidesetty Sudhir K, Padhy Rabindra N

机构信息

Central Research Laboratory, IMS and Sum Hospital, Siksha 'O' Anusandhan University, K-8 Kalinga Nagar, Bhubaneswar 751003, Odisha, India.

Department of Pharmaceutical Chemistry, School of Pharmaceutical Sciences, Siksha 'O'Anusandhan University, Bhubaneswar 751003, Odisha, India.

出版信息

Comput Methods Programs Biomed. 2017 Mar;140:185-194. doi: 10.1016/j.cmpb.2016.12.013. Epub 2016 Dec 27.

Abstract

BACKGROUND AND OBJECTIVE

To develop 6 conjugate agents of the moribund antibiotic sulfamethoxazole (SMZ) joined to 6 individual monoterpenes, followed by protocols of medicinal chemistry as potent antibacterials, against multidrug resistant (MDR) human gruesome pathogenic bacteria.

METHODS

Antibacterial activities of the proposed conjugates were ascertained by the 'prediction of activity spectra of substances' (PASS) program. Drug-likeness parameters and toxicity profiles of conjugates were standardized with the Lipinski rule of five, using cheminformatic tools, Molsoft, molinspiration, OSIRIS and ProTox. Antibacterial activities of individual chemicals and conjugates were examined by targeting the bacterial folic acid biosynthesis enzyme, dihydropteroate synthases (DHPSs) of bacteria, Bacillus anthracis, Escherichia coli, Staphylococcus aureus, Streptococcus pneumoniae and Mycobacterium tuberculosis, with 3D structures of DHPSs from protein data bank.

RESULTS

According to the PASS program, biological spectral values of conjugate-2, conjugate-5 and conjugate-6 were ascertained effective with 'probably active' or 'Pa' value > 0.5, for anti-infective and antituberculosic activities. Using molecular docking against 5 cited bacterial DHPSs, effective docking scores of 6 monoterpenes in the specified decreasing order (kcal/mol): -9.72 (eugenol against B. anthracis), -9.61 (eugenol against S. pneumoniae), -9. 42 (safrol, against B. anthracis), -9.39 (thymol, against M. tuberculosis), -9.34 (myristicin, against S. pneumoniae) and -9.29 (thymol, against B. anthracis); whereas the lowest docking score of SMZ was -8.46kcal/mol against S. aureus DHPS. Similarly, effective docking scores of conjugates were as specified (kcal/mol.): -10.80 (conjugate-4 consisting SMZ+safrol, against M. tuberculosis), -10.78 (conjugate-5 consisting SMZ+thymol, against M. tuberculosis), -10.60 (conjugate-5 against B. anthracis), -10.26 (conjugate-2 consisting SMZ+ eugenol, against M. tuberculosis), -10.25 (conjugate-5, against S. aureus) and -10.19 (conjugate-2 against S. pneumoniae. Conjugates-2 and -5 were the most effective antibacterials based on Lipinski rule of five with lethal doses 3471 and 3500mg/kg, respectively and toxicity class levels.

CONCLUSIONS

Conjugate-2 and conjugate-5 were more effective than individual monoterpenes and SMZ, against pathogenic bacteria. Synthesis, characterization and in vitro antibacterial study with acute toxicity testing for Wister rat model of the conjugate-5 could land at success in the recorded computational trial and it could be promoted for synthesis in the control of MDR bacteria.

摘要

背景与目的

研发6种濒死抗生素磺胺甲恶唑(SMZ)与6种不同单萜类化合物连接而成的共轭物,并按照药物化学方案将其作为强效抗菌剂,用于对抗多重耐药(MDR)的人类可怕病原菌。

方法

通过“物质活性谱预测”(PASS)程序确定所提议共轭物的抗菌活性。使用化学信息学工具Molsoft、molinspiration、OSIRIS和ProTox,依据Lipinski五规则对共轭物的类药性质参数和毒性概况进行标准化。通过靶向细菌叶酸生物合成酶——炭疽芽孢杆菌、大肠杆菌、金黄色葡萄球菌、肺炎链球菌和结核分枝杆菌的二氢蝶酸合酶(DHPSs),利用蛋白质数据库中DHPSs的三维结构,检测各化学品及共轭物的抗菌活性。

结果

根据PASS程序,共轭物-2、共轭物-5和共轭物-6的生物谱值在抗感染和抗结核活性方面,以“可能有活性”或“Pa”值>0.5确定为有效。通过针对5种上述细菌的DHPSs进行分子对接,6种单萜类化合物的有效对接分数按指定降序排列(千卡/摩尔):-9.72(丁香酚对炭疽芽孢杆菌)、-9.61(丁香酚对肺炎链球菌)-9.42(黄樟素对炭疽芽孢杆菌)、-9.39(百里香酚对结核分枝杆菌)、-9.34(肉豆蔻醚对肺炎链球菌)和-9.29(百里香酚对炭疽芽孢杆菌);而磺胺甲恶唑对金黄色葡萄球菌DHPS的最低对接分数为-8.46千卡/摩尔。同样,共轭物的有效对接分数如下(千卡/摩尔):-10.80(由磺胺甲恶唑+黄樟素组成的共轭物-4对结核分枝杆菌)、-10.78(由磺胺甲恶唑+百里香酚组成的共轭物-5对结核分枝杆菌)、-10.60(共轭物-5对炭疽芽孢杆菌)、-10.26(由磺胺甲恶唑+丁香酚组成的共轭物-2对结核分枝杆菌)、-10.25(共轭物-5对金黄色葡萄球菌)和-10.19(共轭物-2对肺炎链球菌)。基于Lipinski五规则及致死剂量分别为3471和3500毫克/千克以及毒性分级水平,共轭物-2和共轭物-5是最有效的抗菌剂。

结论

共轭物-2和共轭物-5在对抗病原菌方面比单个单萜类化合物和磺胺甲恶唑更有效。对共轭物-5进行合成、表征以及针对Wister大鼠模型的体外抗菌研究和急性毒性试验,可能会在记录的计算试验中取得成功,并且可以推广其合成以用于控制多重耐药菌。

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