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非线性混合模型与羔羊蜱虫感染选择反应的比较。

A comparison of nonlinear mixed models and response to selection of tick-infestation on lambs.

作者信息

Sae-Lim Panya, Grøva Lise, Olesen Ingrid, Varona Luis

机构信息

Nofima AS, Osloveien 1, Ås, Norway.

Norwegian Institute of Bioeconomy Research (NIBIO), Gunnars veg 6, Tingvoll, Norway.

出版信息

PLoS One. 2017 Mar 3;12(3):e0172711. doi: 10.1371/journal.pone.0172711. eCollection 2017.

DOI:10.1371/journal.pone.0172711
PMID:28257433
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5336382/
Abstract

Tick-borne fever (TBF) is stated as one of the main disease challenges in Norwegian sheep farming during the grazing season. TBF is caused by the bacterium Anaplasma phagocytophilum that is transmitted by the tick Ixodes ricinus. A sustainable strategy to control tick-infestation is to breed for genetically robust animals. In order to use selection to genetically improve traits we need reliable estimates of genetic parameters. The standard procedures for estimating variance components assume a Gaussian distribution of the data. However, tick-count data is a discrete variable and, thus, standard procedures using linear models may not be appropriate. Thus, the objectives of this study were twofold: 1) to compare four alternative non-linear models: Poisson, negative binomial, zero-inflated Poisson and zero-inflated negative binomial based on their goodness of fit for quantifying genetic variation, as well as heritability for tick-count and 2) to investigate potential response to selection against tick-count based on truncation selection given the estimated genetic parameters from the best fit model. Our results showed that zero-inflated Poisson was the most parsimonious model for the analysis of tick count data. The resulting estimates of variance components and high heritability (0.32) led us to conclude that genetic determinism is relevant on tick count. A reduction of the breeding values for tick-count by one sire-dam genetic standard deviation on the liability scale will reduce the number of tick counts below an average of 1. An appropriate breeding scheme could control tick-count and, as a consequence, probably reduce TBF in sheep.

摘要

蜱传发热(TBF)被认为是挪威绵羊养殖在放牧季节面临的主要疾病挑战之一。TBF由嗜吞噬细胞无形体细菌引起,该细菌通过蓖麻硬蜱传播。控制蜱虫侵扰的可持续策略是培育基因强健的动物。为了利用选择来遗传改良性状,我们需要可靠的遗传参数估计值。估计方差成分的标准程序假定数据呈高斯分布。然而,蜱虫计数数据是一个离散变量,因此,使用线性模型的标准程序可能不合适。因此,本研究的目标有两个:1)比较四种替代非线性模型:泊松模型、负二项式模型、零膨胀泊松模型和零膨胀负二项式模型,基于它们对量化遗传变异的拟合优度以及蜱虫计数的遗传力;2)根据最佳拟合模型估计的遗传参数,研究基于截断选择对蜱虫计数进行选择的潜在反应。我们的结果表明,零膨胀泊松模型是分析蜱虫计数数据最简约的模型。由此得到的方差成分估计值和高遗传力(0.32)使我们得出结论,遗传决定论与蜱虫计数相关。在责任量表上,将蜱虫计数的育种值降低一个父系 - 母系遗传标准差,将使蜱虫计数低于平均1只的数量减少。一个合适的育种方案可以控制蜱虫计数,从而可能减少绵羊中的TBF。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7075/5336382/b960c3c4302a/pone.0172711.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7075/5336382/7695d08381c2/pone.0172711.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7075/5336382/8ffc3f2a9677/pone.0172711.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7075/5336382/b960c3c4302a/pone.0172711.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7075/5336382/7695d08381c2/pone.0172711.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7075/5336382/8ffc3f2a9677/pone.0172711.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7075/5336382/b960c3c4302a/pone.0172711.g003.jpg

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