Ayres D R, Pereira R J, Boligon A A, Silva F F, Schenkel F S, Roso V M, Albuquerque L G
Faculdade de Ciências Agrárias e Veterinárias, UNESP, Jaboticabal, Brazil.
J Anim Breed Genet. 2013 Dec;130(6):417-24. doi: 10.1111/jbg.12036. Epub 2013 Apr 10.
Cattle resistance to ticks is measured by the number of ticks infesting the animal. The model used for the genetic analysis of cattle resistance to ticks frequently requires logarithmic transformation of the observations. The objective of this study was to evaluate the predictive ability and goodness of fit of different models for the analysis of this trait in cross-bred Hereford x Nellore cattle. Three models were tested: a linear model using logarithmic transformation of the observations (MLOG); a linear model without transformation of the observations (MLIN); and a generalized linear Poisson model with residual term (MPOI). All models included the classificatory effects of contemporary group and genetic group and the covariates age of animal at the time of recording and individual heterozygosis, as well as additive genetic effects as random effects. Heritability estimates were 0.08 ± 0.02, 0.10 ± 0.02 and 0.14 ± 0.04 for MLIN, MLOG and MPOI models, respectively. The model fit quality, verified by deviance information criterion (DIC) and residual mean square, indicated fit superiority of MPOI model. The predictive ability of the models was compared by validation test in independent sample. The MPOI model was slightly superior in terms of goodness of fit and predictive ability, whereas the correlations between observed and predicted tick counts were practically the same for all models. A higher rank correlation between breeding values was observed between models MLOG and MPOI. Poisson model can be used for the selection of tick-resistant animals.
牛对蜱虫的抗性通过寄生于动物身上的蜱虫数量来衡量。用于牛对蜱虫抗性遗传分析的模型通常需要对观测值进行对数转换。本研究的目的是评估不同模型对杂交赫里福德×内洛尔牛这一性状分析的预测能力和拟合优度。测试了三种模型:一种是对观测值进行对数转换的线性模型(MLOG);一种是不对观测值进行转换的线性模型(MLIN);以及一种带有残差项的广义线性泊松模型(MPOI)。所有模型都包括当代组和遗传组的分类效应以及记录时动物的年龄和个体杂合度等协变量,以及作为随机效应的加性遗传效应。MLIN、MLOG和MPOI模型的遗传力估计值分别为0.08±0.02、0.10±0.02和0.14±0.04。通过偏差信息准则(DIC)和残差均方验证的模型拟合质量表明MPOI模型的拟合优越性。通过在独立样本中的验证测试比较了模型的预测能力。MPOI模型在拟合优度和预测能力方面略占优势,而所有模型观测到的和预测的蜱虫数量之间的相关性实际上是相同的。在MLOG和MPOI模型之间观察到育种值之间具有更高的秩相关性。泊松模型可用于选择抗蜱虫的动物。