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控制流动条件下细菌种群扩张的有限尺寸效应。

Finite-size effects on bacterial population expansion under controlled flow conditions.

机构信息

Department of Applied Physics and J.M. Burgers Centre for Fluid Dynamics, Eindhoven University of Technology, 5600 MB Eindhoven, The Netherlands.

Department of Biomedical Engineering, Laboratory of Chemical Biology and Institute of Complex Molecular Systems, Eindhoven University of Technology, 5600 MB Eindhoven, The Netherlands.

出版信息

Sci Rep. 2017 Mar 6;7:43903. doi: 10.1038/srep43903.

Abstract

The expansion of biological species in natural environments is usually described as the combined effect of individual spatial dispersal and growth. In the case of aquatic ecosystems flow transport can also be extremely relevant as an extra, advection induced, dispersal factor. We designed and assembled a dedicated microfluidic device to control and quantify the expansion of populations of E. coli bacteria under both co-flowing and counter-flowing conditions, measuring the front speed at varying intensity of the imposed flow. At variance with respect to the case of classic advective-reactive-diffusive chemical fronts, we measure that almost irrespective of the counter-flow velocity, the front speed remains finite at a constant positive value. A simple model incorporating growth, dispersion and drift on finite-size hard beads allows to explain this finding as due to a finite volume effect of the bacteria. This indicates that models based on the Fisher-Kolmogorov-Petrovsky-Piscounov equation (FKPP) that ignore the finite size of organisms may be inaccurate to describe the physics of spatial growth dynamics of bacteria.

摘要

生物物种在自然环境中的扩张通常被描述为个体空间扩散和生长的综合效应。在水生生态系统中,流动输运也可以作为一种额外的、由平流引起的扩散因素而非常重要。我们设计并组装了一种专用的微流控装置,以控制和量化大肠杆菌种群在共流和逆流条件下的扩张,测量在不同施加流速下的前沿速度。与经典的平流反应扩散化学前沿的情况不同,我们发现,几乎与逆流速度无关,前沿速度在恒定的正值下保持有限。一个包含生长、扩散和在有限大小硬球上漂移的简单模型可以解释这一发现,这是由于细菌的有限体积效应。这表明,基于忽略生物体有限大小的 Fisher-Kolmogorov-Petrovsky-Piscounov 方程(FKPP)的模型可能不准确,无法描述细菌空间生长动力学的物理特性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cfd7/5338255/35ae923cb5e2/srep43903-f1.jpg

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