从嗜热产电产甲烷生物阴极宏基因组重建的新型 sp. 菌株EMTCatB1的基因组序列草图
Draft Genome Sequence of a Novel sp. Strain, EMTCatB1, Reconstructed from the Metagenome of a Thermophilic Electromethanogenic Biocathode.
作者信息
Kobayashi Hajime, Fu Qian, Maeda Haruo, Sato Kozo
机构信息
Department of System Innovation, Graduate School of Engineering, University of Tokyo, Tokyo, Japan
Engineering for Sustainable Carbon Cycle (INPEX Corporation) Social Cooperation Program, Frontier Research Center for Energy and Resources (FRCER), University of Tokyo, Tokyo, Japan.
出版信息
Genome Announc. 2017 Mar 9;5(10):e00022-17. doi: 10.1128/genomeA.00022-17.
Abstract
A draft genome of sp. strain EMTCatB1 was determined through taxonomic binning of a metagenome of a thermophilic biocathode actively catalyzing electromethanogenesis. This genome will provide information about the biocathode ecosystem, as well as the natural diversity of the family.
摘要
通过对一个积极催化电产甲烷的嗜热生物阴极宏基因组进行分类分箱，确定了 sp. 菌株 EMTCatB1 的基因组草图。该基因组将提供有关生物阴极生态系统以及该菌科自然多样性的信息。
相似文献
1
Draft Genome Sequence of a Novel sp. Strain, EMTCatB1, Reconstructed from the Metagenome of a Thermophilic Electromethanogenic Biocathode.
Genome Announc. 2017 Mar 9;5(10):e00022-17. doi: 10.1128/genomeA.00022-17.
2
Draft Genome Sequence of sp. Strain EMTCatA1, Reconstructed from the Metagenome of a Thermophilic Electromethanogenesis-Catalyzing Biocathode.
Genome Announc. 2017 Aug 31;5(35):e00892-17. doi: 10.1128/genomeA.00892-17.
3
Analysis of a Methanogen and an Actinobacterium Dominating the Thermophilic Microbial Community of an Electromethanogenic Biocathode.
Archaea. 2021 Mar 1;2021:8865133. doi: 10.1155/2021/8865133. eCollection 2021.
4
Draft Genome Sequence of sp. Strain 34x, Reconstructed from an Enriched Electromethanogenic Biocathode.
Microbiol Resour Announc. 2019 Nov 7;8(45):e01138-19. doi: 10.1128/MRA.01138-19.
5
Bioelectrochemical analyses of the development of a thermophilic biocathode catalyzing electromethanogenesis.
Environ Sci Technol. 2015 Jan 20;49(2):1225-32. doi: 10.1021/es5052233.
6
Draft Genome Sequence of Sulfurospirillum sp. Strain MES, Reconstructed from the Metagenome of a Microbial Electrosynthesis System.
Genome Announc. 2015 Jan 15;3(1):e01336-14. doi: 10.1128/genomeA.01336-14.
7
Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes.
BMC Genomics. 2017 Nov 28;18(1):915. doi: 10.1186/s12864-017-4294-1.
8
Evidence of Spatial Homogeneity in an Electromethanogenic Cathodic Microbial Community.
Front Microbiol. 2019 Jul 31;10:1747. doi: 10.3389/fmicb.2019.01747. eCollection 2019.
9
Taxonomic binning of metagenome samples generated by next-generation sequencing technologies.
Brief Bioinform. 2012 Nov;13(6):646-55. doi: 10.1093/bib/bbs031. Epub 2012 Jul 31.
10
Draft Genome Sequence of Methanohalophilus mahii Strain DAL1 Reconstructed from a Hydraulic Fracturing-Produced Water Metagenome.
Genome Announc. 2016 Sep 1;4(5):e00899-16. doi: 10.1128/genomeA.00899-16.
引用本文的文献
1
Analysis of a Methanogen and an Actinobacterium Dominating the Thermophilic Microbial Community of an Electromethanogenic Biocathode.
Archaea. 2021 Mar 1;2021:8865133. doi: 10.1155/2021/8865133. eCollection 2021.
2
A variety of hydrogenotrophic enrichment cultures catalyse cathodic reactions.
Sci Rep. 2019 Feb 20;9(1):2356. doi: 10.1038/s41598-018-38006-3.
3
The Water Hyacinth Microbiome: Link Between Carbon Turnover and Nutrient Cycling.
Microb Ecol. 2019 Oct;78(3):575-588. doi: 10.1007/s00248-019-01331-9. Epub 2019 Feb 1.
4
Effect of a butyrate-fortified milk replacer on gastrointestinal microbiota and products of fermentation in artificially reared dairy calves at weaning.
Sci Rep. 2018 Oct 8;8(1):14901. doi: 10.1038/s41598-018-33122-6.
5
Development of a production chain from vegetable biowaste to platform chemicals.
Microb Cell Fact. 2018 Jun 13;17(1):90. doi: 10.1186/s12934-018-0937-4.
6
Draft Genome Sequence of sp. Strain EMTCatA1, Reconstructed from the Metagenome of a Thermophilic Electromethanogenesis-Catalyzing Biocathode.
Genome Announc. 2017 Aug 31;5(35):e00892-17. doi: 10.1128/genomeA.00892-17.
本文引用的文献
1
Extracellular electron transfer from cathode to microbes: application for biofuel production.
Biotechnol Biofuels. 2016 Jan 19;9:11. doi: 10.1186/s13068-016-0426-0. eCollection 2016.
2
Sealer: a scalable gap-closing application for finishing draft genomes.
BMC Bioinformatics. 2015 Jul 25;16(1):230. doi: 10.1186/s12859-015-0663-4.
3
Extracellular enzymes facilitate electron uptake in biocorrosion and bioelectrosynthesis.
mBio. 2015 Apr 21;6(2):e00496-15. doi: 10.1128/mBio.00496-15.
4
Bioelectrochemical analyses of the development of a thermophilic biocathode catalyzing electromethanogenesis.
Environ Sci Technol. 2015 Jan 20;49(2):1225-32. doi: 10.1021/es5052233.
5
Intestinal microbiota in metabolic diseases: from bacterial community structure and functions to species of pathophysiological relevance.
Gut Microbes. 2014 Jul 1;5(4):544-51. doi: 10.4161/gmic.29331. Epub 2014 Jul 8.
6
Direct biological conversion of electrical current into methane by electromethanogenesis.
Environ Sci Technol. 2009 May 15;43(10):3953-8. doi: 10.1021/es803531g.
7
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
8
GeneLook: a novel ab initio gene identification system suitable for automated annotation of prokaryotic sequences.
Gene. 2005 Feb 14;346:115-25. doi: 10.1016/j.gene.2004.10.018. Epub 2005 Jan 26.
9
The COG database: a tool for genome-scale analysis of protein functions and evolution.
Nucleic Acids Res. 2000 Jan 1;28(1):33-6. doi: 10.1093/nar/28.1.33.
Zotero 插件