Tang Qian-Yuan, Zhang Yang-Yang, Wang Jun, Wang Wei, Chialvo Dante R
National Lab of Solid State Microstructure, Collaborative Innovation Center of Advanced Microstructures, and Department of Physics, Nanjing University, Nanjing 210093, China.
CEMSC3, Center for Complex Systems & Brain Sciences, Escuela de Ciencia y Tecnología, Universidad Nacional de San Martín & Consejo Nacional de Investigaciones Científicas y Tecnológicas (CONICET), 25 de Mayo y Francia, San Martín(1650), Buenos Aires, Argentina.
Phys Rev Lett. 2017 Feb 24;118(8):088102. doi: 10.1103/PhysRevLett.118.088102.
Based on protein structural ensembles determined by nuclear magnetic resonance, we study the position fluctuations of residues by calculating distance-dependent correlations and conducting finite-size scaling analysis. The fluctuations exhibit high susceptibility and long-range correlations up to the protein sizes. The scaling relations between the correlations or susceptibility and protein sizes resemble those in other physical and biological systems near their critical points. These results indicate that, at the native states, motions of each residue are felt by every other one in the protein. We also find that proteins with larger susceptibility are more frequently observed in nature. Overall, our results suggest that the protein's native state is critical.
基于通过核磁共振确定的蛋白质结构系综,我们通过计算距离相关系数并进行有限尺寸标度分析来研究残基的位置波动。这些波动表现出高敏感性和直至蛋白质大小的长程相关性。相关性或敏感性与蛋白质大小之间的标度关系类似于其他物理和生物系统在其临界点附近的关系。这些结果表明,在天然状态下,蛋白质中每个残基的运动都能被其他残基感知到。我们还发现,在自然界中更频繁观察到具有较大敏感性的蛋白质。总体而言,我们的结果表明蛋白质的天然状态至关重要。