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“埃伦昆氏甲烷二氯单胞菌(暂名)”新属,新种,一种属于消化球菌科的二氯甲烷降解厌氧菌。

'Candidatus Dichloromethanomonas elyunquensis' gen. nov., sp. nov., a dichloromethane-degrading anaerobe of the Peptococcaceae family.

作者信息

Kleindienst Sara, Higgins Steven A, Tsementzi Despina, Chen Gao, Konstantinidis Konstantinos T, Mack E Erin, Löffler Frank E

机构信息

University of Tennessee and Oak Ridge National Laboratory (UT-ORNL) Joint Institute for Biological Sciences (JIBS) and Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA; Department of Microbiology, University of Tennessee, Knoxville, TN 37996, USA; Center for Environmental Biotechnology, University of Tennessee, Knoxville, TN 37996, USA.

University of Tennessee and Oak Ridge National Laboratory (UT-ORNL) Joint Institute for Biological Sciences (JIBS) and Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA; Department of Microbiology, University of Tennessee, Knoxville, TN 37996, USA; Center for Environmental Biotechnology, University of Tennessee, Knoxville, TN 37996, USA.

出版信息

Syst Appl Microbiol. 2017 Apr;40(3):150-159. doi: 10.1016/j.syapm.2016.12.001. Epub 2016 Dec 21.

Abstract

Taxonomic assignments of anaerobic dichloromethane (DCM)-degrading bacteria remain poorly constrained but are important for understanding the microbial diversity of organisms contributing to DCM turnover in environmental systems. We describe the taxonomic classification of a novel DCM degrader in consortium RM obtained from pristine Rio Mameyes sediment. Phylogenetic analysis of full-length 16S rRNA gene sequences demonstrated that the DCM degrader was most closely related to members of the genera Dehalobacter and Syntrophobotulus, but sequence similarities did not exceed 94% and 93%, respectively. Genome-aggregate average amino acid identities against Peptococcaceae members did not exceed 66%, suggesting that the DCM degrader does not affiliate with any described genus. Phylogenetic analysis of conserved single-copy functional genes supported that the DCM degrader represents a novel clade. Growth strictly depended on the presence of DCM, which was consumed at a rate of 160±3μmolL d. The DCM degrader attained 5.25×10±1.0×10 cells per μmol DCM consumed. Fluorescence in situ hybridization revealed rod-shaped cells 4±0.8μm long and 0.4±0.1μm wide. Based on the unique phylogenetic, genomic, and physiological characteristics, we propose that the DCM degrader represents a new genus and species, 'Candidatus Dichloromethanomonas elyunquensis'.

摘要

厌氧二氯甲烷(DCM)降解细菌的分类归属仍存在很大的不确定性,但对于了解环境系统中参与DCM周转的微生物多样性非常重要。我们描述了从原始的马梅耶斯河沉积物中获得的RM菌群中一种新型DCM降解菌的分类情况。对全长16S rRNA基因序列的系统发育分析表明,该DCM降解菌与脱卤杆菌属和互营梭菌属的成员关系最为密切,但序列相似性分别不超过94%和93%。与消化球菌科成员的基因组聚合平均氨基酸同一性不超过66%,这表明该DCM降解菌不属于任何已描述的属。对保守单拷贝功能基因的系统发育分析支持该DCM降解菌代表一个新的进化枝。生长严格依赖于DCM的存在,其消耗速率为160±3μmolL d。每消耗1μmol DCM,该DCM降解菌可达到5.25×10±1.0×10个细胞。荧光原位杂交显示细胞呈杆状,长4±0.8μm,宽0.4±0.1μm。基于独特的系统发育、基因组和生理特征,我们提议将该DCM降解菌归为一个新的属和种,即“埃柳恩昆斯假二氯甲烷单胞菌(Candidatus Dichloromethanomonas elyunquensis)”。

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