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OEPR 克隆:一种高效、无缝的大片段和多片段克隆策略。

OEPR Cloning: an Efficient and Seamless Cloning Strategy for Large- and Multi-Fragments.

机构信息

Research Center of Biological Information, College of Science, National University of Defense Technology, Changsha, Hunan 410073, China.

Beijing Institute of Pharmaceutical Chemistry, Beijing 102205, China.

出版信息

Sci Rep. 2017 Mar 16;7:44648. doi: 10.1038/srep44648.

DOI:10.1038/srep44648
PMID:28300166
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5353728/
Abstract

Here, an efficient cloning strategy for large DNA fragments and for simultaneous assembly of multiple DNA fragments assembly is presented. This strategy is named OEPR (based on Overlap Extension PCR and Recombination in vivo). OEPR cloning is a seamless, restriction- and ligation-independent method. The method takes advantage of both homologous recombination enzymes in E. coli and overlap PCR. Using OEPR cloning, a long fragment (1-6 kb) or multiple fragments (2-4 fragments) can be easily constructed and simultaneously assembled into a target vector.

摘要

这里提出了一种用于大片段 DNA 克隆和多个 DNA 片段同时组装的有效克隆策略。该策略命名为 OEPR(基于重叠延伸 PCR 和体内重组)。OEPR 克隆是一种无缝、无限制酶切和连接的方法。该方法利用了大肠杆菌中的同源重组酶和重叠 PCR。使用 OEPR 克隆,可以轻松构建长片段(1-6kb)或多个片段(2-4 个片段),并同时将它们组装到目标载体中。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a18/5353728/936a4a0d2551/srep44648-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a18/5353728/a6a13067e902/srep44648-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a18/5353728/3382554accec/srep44648-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a18/5353728/90867944032e/srep44648-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a18/5353728/b8a1cd6de71e/srep44648-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a18/5353728/936a4a0d2551/srep44648-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a18/5353728/a6a13067e902/srep44648-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a18/5353728/3382554accec/srep44648-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a18/5353728/90867944032e/srep44648-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a18/5353728/b8a1cd6de71e/srep44648-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a18/5353728/936a4a0d2551/srep44648-f5.jpg

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Recent Advances in Strategies for the Cloning of Natural Product Biosynthetic Gene Clusters.天然产物生物合成基因簇克隆策略的最新进展
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本文引用的文献

1
Restriction-ligation-free (RLF) cloning: a high-throughput cloning method by in vivo homologous recombination of PCR products.无限制酶切连接(RLF)克隆:一种通过PCR产物的体内同源重组实现的高通量克隆方法。
Genet Mol Res. 2015 Oct 9;14(4):12306-15. doi: 10.4238/2015.October.9.19.
2
A simple and efficient seamless DNA cloning method using SLiCE from Escherichia coli laboratory strains and its application to SLiP site-directed mutagenesis.一种使用来自大肠杆菌实验室菌株的SLiCE的简单高效无缝DNA克隆方法及其在SLiP定点诱变中的应用。
BMC Biotechnol. 2015 Jun 3;15:47. doi: 10.1186/s12896-015-0162-8.
3
Exponential megapriming PCR (EMP) cloning--seamless DNA insertion into any target plasmid without sequence constraints.
Thorac Cancer. 2020 Nov;11(11):3409-3415. doi: 10.1111/1759-7714.13660. Epub 2020 Oct 5.
4
A streamlined cloning workflow minimising the time-to-strain pipeline for Pichia pastoris.简化毕赤酵母的克隆工作流程,最大限度地减少菌株生产时间。
Sci Rep. 2017 Nov 17;7(1):15817. doi: 10.1038/s41598-017-16172-0.
5
AFEAP cloning: a precise and efficient method for large DNA sequence assembly.AFEAP 克隆:一种精确高效的大片段 DNA 序列组装方法。
BMC Biotechnol. 2017 Nov 14;17(1):81. doi: 10.1186/s12896-017-0394-x.
指数级大片段引物聚合酶链式反应 (EMP) 克隆 - 无序列限制地无缝将 DNA 插入任何目标质粒中。
PLoS One. 2012;7(12):e53360. doi: 10.1371/journal.pone.0053360. Epub 2012 Dec 31.
4
Inverse fusion PCR cloning.反向融合 PCR 克隆。
PLoS One. 2012;7(4):e35407. doi: 10.1371/journal.pone.0035407. Epub 2012 Apr 17.
5
SLiCE: a novel bacterial cell extract-based DNA cloning method.SLiCE:一种新型基于细菌细胞抽提物的 DNA 克隆方法。
Nucleic Acids Res. 2012 Apr;40(8):e55. doi: 10.1093/nar/gkr1288. Epub 2012 Jan 12.
6
Circular polymerase extension cloning for high-throughput cloning of complex and combinatorial DNA libraries.环形聚合酶延伸克隆技术用于高通量克隆复杂和组合 DNA 文库。
Nat Protoc. 2011 Feb;6(2):242-51. doi: 10.1038/nprot.2010.181. Epub 2011 Feb 3.
7
Applications of the Restriction Free (RF) cloning procedure for molecular manipulations and protein expression.无限制(RF)克隆程序在分子操作和蛋白质表达中的应用。
J Struct Biol. 2010 Oct;172(1):34-44. doi: 10.1016/j.jsb.2010.06.016. Epub 2010 Jun 25.
8
Circular polymerase extension cloning of complex gene libraries and pathways.复杂基因文库和途径的环化聚合酶延伸克隆
PLoS One. 2009 Jul 30;4(7):e6441. doi: 10.1371/journal.pone.0006441.
9
The Polymerase Incomplete Primer Extension (PIPE) method applied to high-throughput cloning and site-directed mutagenesis.应用于高通量克隆和定点诱变的聚合酶不完全引物延伸(PIPE)方法。
Methods Mol Biol. 2009;498:91-103. doi: 10.1007/978-1-59745-196-3_6.
10
Combining the polymerase incomplete primer extension method for cloning and mutagenesis with microscreening to accelerate structural genomics efforts.将用于克隆和诱变的聚合酶不完全引物延伸方法与微筛选相结合,以加速结构基因组学研究工作。
Proteins. 2008 May 1;71(2):982-94. doi: 10.1002/prot.21786.