从内布拉斯加州奥马哈市淡水样本中分离出的噬菌体的全基因组序列
Complete Genome Sequences of Bacteriophages Isolated from Freshwater Samples in Omaha, Nebraska.
作者信息
Lu Guoqing, Luhr Jamie, Stoecklein Andrew, Warner Paige, Tapprich William
机构信息
Department of Biology, University of Nebraska at Omaha, Omaha, Nebraska, USA.
Department of Biology, University of Nebraska at Omaha, Omaha, Nebraska, USA
出版信息
Genome Announc. 2017 Mar 23;5(12):e01501-16. doi: 10.1128/genomeA.01501-16.
Abstract
The complete genome sequences of four bacteriophages, UNO-SLW1 to UNO-SLW4, isolated from freshwater samples, are 39,092 to 39,215 bp long. The genomes are highly similar (identity, >0.995) but dissimilar from that of phage Pf-10 (the closest relative, 0.685 to 0.686 identity), with 48 to 49 protein-coding genes and 66 regulatory sites predicted.
摘要
从淡水样本中分离出的4种噬菌体（UNO-SLW1至UNO-SLW4）的完整基因组序列长度为39,092至39,215碱基对。这些基因组高度相似（同一性>0.995），但与噬菌体Pf-10不同（最接近的亲缘关系，同一性为0.685至0.686），预测有48至49个蛋白质编码基因和66个调控位点。
相似文献
1
Complete Genome Sequences of Bacteriophages Isolated from Freshwater Samples in Omaha, Nebraska.从内布拉斯加州奥马哈市淡水样本中分离出的噬菌体的全基因组序列
Genome Announc. 2017 Mar 23;5(12):e01501-16. doi: 10.1128/genomeA.01501-16.
2
Complete genome sequence of a bacteriophage UNO-G1W1 isolated from freshwater ice in Nebraska.从内布拉斯加州淡水冰中分离出的噬菌体UNO-G1W1的全基因组序列
Microbiol Resour Announc. 2024 Jul 18;13(7):e0038424. doi: 10.1128/mra.00384-24. Epub 2024 Jun 7.
3
Complete genome sequences of two novel autographiviruses infecting a bacterium from the Pseudomonas fluorescens group.两种新型自转录病毒感染荧光假单胞菌属细菌的全基因组序列
Arch Virol. 2017 Sep;162(9):2907-2911. doi: 10.1007/s00705-017-3419-9. Epub 2017 May 27.
4
Complete genome sequence of PFP1, a novel T7-like Pseudomonas fluorescens bacteriophage.新型T7样荧光假单胞菌噬菌体PFP1的全基因组序列
Arch Virol. 2018 Dec;163(12):3423-3426. doi: 10.1007/s00705-018-3979-3. Epub 2018 Aug 17.
5
Complete genome sequences of Aeromonas and Pseudomonas phages as a supportive tool for development of antibacterial treatment in aquaculture.完整的气单胞菌和假单胞菌噬菌体基因组序列可作为水产养殖中抗菌治疗开发的辅助工具。
Virol J. 2019 Jan 8;16(1):4. doi: 10.1186/s12985-018-1113-5.
6
Characterization of a bacteriophage with broad host range against strains of Pseudomonas aeruginosa isolated from domestic animals.一种具有广泛宿主范围的噬菌体，可针对从家畜中分离出的铜绿假单胞菌菌株。
BMC Microbiol. 2019 Jun 17;19(1):134. doi: 10.1186/s12866-019-1481-z.
7
Complete Genome Sequences of Three Novel SBW25 Bacteriophages, Noxifer, Phabio, and Skulduggery.三种新型SBW25噬菌体Noxifer、Phabio和Skulduggery的全基因组序列
Genome Announc. 2017 Aug 3;5(31):e00725-17. doi: 10.1128/genomeA.00725-17.
8
Complete genome sequence of the lytic cold-active Pseudomonas fluorescens bacteriophage VSW-3 from Napahai plateau wetland.来自纳帕海高原湿地的溶菌性冷活性荧光假单胞菌噬菌体VSW-3的全基因组序列
Virus Genes. 2017 Feb;53(1):146-150. doi: 10.1007/s11262-016-1403-1. Epub 2016 Oct 31.
9
Complete Genome Sequences of Bacteriophages Danno, Otwor, and Scumberland, Isolated in Clarksville, Tennessee.在田纳西州克拉克斯维尔分离出的噬菌体丹诺、奥特沃尔和斯坎伯兰的全基因组序列
Microbiol Resour Announc. 2021 Apr 1;10(13):e00209-21. doi: 10.1128/MRA.00209-21.
10
Comparative Genomic Analysis of 130 Bacteriophages Infecting Bacteria in the Genus .130种感染该属细菌的噬菌体的比较基因组分析
Front Microbiol. 2018 Jul 4;9:1456. doi: 10.3389/fmicb.2018.01456. eCollection 2018.
引用本文的文献
1
Characterization of selected phages for biocontrol of food-spoilage pseudomonads.用于食品腐败假单胞菌生物防治的选定噬菌体的特性。
Int Microbiol. 2024 Aug;27(4):1333-1344. doi: 10.1007/s10123-023-00479-2. Epub 2024 Jan 11.
2
Characterization of a bacteriophage with broad host range against strains of Pseudomonas aeruginosa isolated from domestic animals.一种具有广泛宿主范围的噬菌体，可针对从家畜中分离出的铜绿假单胞菌菌株。
BMC Microbiol. 2019 Jun 17;19(1):134. doi: 10.1186/s12866-019-1481-z.
3
Diversity Within Urban Freshwaters.城市淡水的多样性
Front Microbiol. 2019 Feb 15;10:195. doi: 10.3389/fmicb.2019.00195. eCollection 2019.
4
A Lytic Bacteriophage for Controlling Pseudomonas lactis in Raw Cow's Milk.用于控制生牛乳中乳脂明串珠菌的裂解噬菌体。
Appl Environ Microbiol. 2018 Aug 31;84(18). doi: 10.1128/AEM.00111-18. Print 2018 Sep 15.
本文引用的文献
1
Microbiology, genomics, and clinical significance of the Pseudomonas fluorescens species complex, an unappreciated colonizer of humans.荧光假单胞菌物种复合体的微生物学、基因组学及临床意义，一种未被充分认识的人类定植菌。
Clin Microbiol Rev. 2014 Oct;27(4):927-48. doi: 10.1128/CMR.00044-14.
2
ARNold: a web tool for the prediction of Rho-independent transcription terminators.ARNold：一个用于预测 Rho 不依赖转录终止子的网络工具。
RNA Biol. 2011 Jan-Feb;8(1):11-3. doi: 10.4161/rna.8.1.13346. Epub 2011 Jan 1.
3
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.《天鹅绒：使用德布鲁因图进行从头短读长拼接的算法》
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
4
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
5
PHIRE, a deterministic approach to reveal regulatory elements in bacteriophage genomes.PHIRE，一种揭示噬菌体基因组中调控元件的确定性方法。
Bioinformatics. 2004 Mar 22;20(5):629-35. doi: 10.1093/bioinformatics/btg456. Epub 2004 Jan 22.
6
Identification of a novel bacterial sequence associated with Crohn's disease.鉴定与克罗恩病相关的一种新型细菌序列。
Gastroenterology. 2000 Jul;119(1):23-31. doi: 10.1053/gast.2000.8519.
7
DNA homology in species of bacteriophages active on Pseudomonas aeruginosa.对铜绿假单胞菌有活性的噬菌体物种中的DNA同源性。
Arch Virol. 1993;131(1-2):141-51. doi: 10.1007/BF01379086.
Zotero 插件