Suppr超能文献

BRIDG:用于转化医学和临床方案驱动研究的领域信息模型

BRIDG: a domain information model for translational and clinical protocol-driven research.

作者信息

Becnel Lauren B, Hastak Smita, Ver Hoef Wendy, Milius Robert P, Slack MaryAnn, Wold Diane, Glickman Michael L, Brodsky Boris, Jaffe Charles, Kush Rebecca, Helton Edward

机构信息

Clinical Data Interchange Standards Consortium, Austin, TX, USA.

Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, TX, USA.

出版信息

J Am Med Inform Assoc. 2017 Sep 1;24(5):882-890. doi: 10.1093/jamia/ocx004.

Abstract

BACKGROUND

It is critical to integrate and analyze data from biological, translational, and clinical studies with data from health systems; however, electronic artifacts are stored in thousands of disparate systems that are often unable to readily exchange data.

OBJECTIVE

To facilitate meaningful data exchange, a model that presents a common understanding of biomedical research concepts and their relationships with health care semantics is required. The Biomedical Research Integrated Domain Group (BRIDG) domain information model fulfills this need. Software systems created from BRIDG have shared meaning "baked in," enabling interoperability among disparate systems. For nearly 10 years, the Clinical Data Standards Interchange Consortium, the National Cancer Institute, the US Food and Drug Administration, and Health Level 7 International have been key stakeholders in developing BRIDG.

METHODS

BRIDG is an open-source Unified Modeling Language-class model developed through use cases and harmonization with other models.

RESULTS

With its 4+ releases, BRIDG includes clinical and now translational research concepts in its Common, Protocol Representation, Study Conduct, Adverse Events, Regulatory, Statistical Analysis, Experiment, Biospecimen, and Molecular Biology subdomains.

INTERPRETATION

The model is a Clinical Data Standards Interchange Consortium, Health Level 7 International, and International Standards Organization standard that has been utilized in national and international standards-based software development projects. It will continue to mature and evolve in the areas of clinical imaging, pathology, ontology, and vocabulary support. BRIDG 4.1.1 and prior releases are freely available at https://bridgmodel.nci.nih.gov .

摘要

背景

将生物学、转化医学和临床研究的数据与卫生系统的数据进行整合和分析至关重要;然而,电子工件存储在数千个不同的系统中,这些系统往往无法轻松地交换数据。

目的

为促进有意义的数据交换,需要一个能够对生物医学研究概念及其与医疗保健语义学的关系达成共识的模型。生物医学研究集成领域组(BRIDG)领域信息模型满足了这一需求。基于BRIDG创建的软件系统具有内在的共享含义,能够实现不同系统之间的互操作性。近十年来,临床数据标准交换联盟、美国国立癌症研究所、美国食品药品监督管理局和卫生信息标准化组织(Health Level 7 International)一直是开发BRIDG的关键利益相关者。

方法

BRIDG是一个通过用例并与其他模型协调开发的开源统一建模语言类模型。

结果

随着4次以上的发布,BRIDG在其通用、协议表示、研究实施、不良事件、监管、统计分析、实验、生物样本和分子生物学子领域中纳入了临床研究概念,现在还纳入了转化医学研究概念。

解读

该模型是临床数据标准交换联盟、卫生信息标准化组织和国际标准化组织的标准,已在基于国家标准的国内外软件开发项目中得到应用。它将在临床成像、病理学、本体论和词汇支持等领域继续成熟和发展。BRIDG 4.1.1及之前的版本可在https://bridgmodel.nci.nih.gov上免费获取。

相似文献

2
The BRIDG project: a technical report.BRIDG项目:一份技术报告。
J Am Med Inform Assoc. 2008 Mar-Apr;15(2):130-7. doi: 10.1197/jamia.M2556. Epub 2007 Dec 20.
3
Life sciences domain analysis model.生命科学领域分析模型。
J Am Med Inform Assoc. 2012 Nov-Dec;19(6):1095-102. doi: 10.1136/amiajnl-2011-000763. Epub 2012 Jun 28.
5
User-centered semantic harmonization: a case study.以用户为中心的语义协调:一个案例研究。
J Biomed Inform. 2007 Jun;40(3):353-64. doi: 10.1016/j.jbi.2007.03.004. Epub 2007 Mar 21.
8
Providing semantic interoperability between clinical care and clinical research domains.在临床护理和临床研究领域提供语义互操作性。
IEEE J Biomed Health Inform. 2013 Mar;17(2):356-69. doi: 10.1109/TITB.2012.2219552. Epub 2012 Sep 18.

引用本文的文献

4
NCI Imaging Data Commons.NCI 成像数据联合组织。
Cancer Res. 2021 Aug 15;81(16):4188-4193. doi: 10.1158/0008-5472.CAN-21-0950. Epub 2021 Jun 15.

本文引用的文献

1
Genenames.org: the HGNC and VGNC resources in 2017.Genenames.org:2017年的HGNC和VGNC资源。
Nucleic Acids Res. 2017 Jan 4;45(D1):D619-D625. doi: 10.1093/nar/gkw1033. Epub 2016 Oct 30.
2
Trial Reporting in ClinicalTrials.gov - The Final Rule.ClinicalTrials.gov 中的试验报告 - 最终规则。
N Engl J Med. 2016 Nov 17;375(20):1998-2004. doi: 10.1056/NEJMsr1611785. Epub 2016 Sep 16.
4
A review of the new HGNC gene family resource.HGNC基因家族新资源综述。
Hum Genomics. 2016 Feb 3;10:6. doi: 10.1186/s40246-016-0062-6.
5
Ensembl 2016.Ensembl 2016。
Nucleic Acids Res. 2016 Jan 4;44(D1):D710-6. doi: 10.1093/nar/gkv1157. Epub 2015 Dec 19.
6
PubChem Substance and Compound databases.美国国立医学图书馆化学物质数据库和化合物数据库。
Nucleic Acids Res. 2016 Jan 4;44(D1):D1202-13. doi: 10.1093/nar/gkv951. Epub 2015 Sep 22.
8
A new initiative on precision medicine.一项关于精准医学的新倡议。
N Engl J Med. 2015 Feb 26;372(9):793-5. doi: 10.1056/NEJMp1500523. Epub 2015 Jan 30.

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验