Homologous Capsid Proteins Testify to the Common Ancestry of Retroviruses, Caulimoviruses, Pseudoviruses, and Metaviruses.
作者信息
Krupovic Mart, Koonin Eugene V
机构信息
Unité Biologie Moléculaire du Gène Chez les Extrêmophiles, Institut Pasteur, Paris, France
National Center for Biotechnology Information, National Library of Medicine, Bethesda, Maryland USA.
出版信息
J Virol. 2017 May 26;91(12). doi: 10.1128/JVI.00210-17. Print 2017 Jun 15.
Abstract
摘要
相似文献
1
Homologous Capsid Proteins Testify to the Common Ancestry of Retroviruses, Caulimoviruses, Pseudoviruses, and Metaviruses.
J Virol. 2017 May 26;91(12). doi: 10.1128/JVI.00210-17. Print 2017 Jun 15.
2
Relationships of gag-pol diversity between Ty3/Gypsy and Retroviridae LTR retroelements and the three kings hypothesis.
BMC Evol Biol. 2008 Oct 8;8:276. doi: 10.1186/1471-2148-8-276.
3
Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees.
Biol Direct. 2009 Nov 2;4:41. doi: 10.1186/1745-6150-4-41.
4
Ortervirales: New Virus Order Unifying Five Families of Reverse-Transcribing Viruses.
J Virol. 2018 May 29;92(12). doi: 10.1128/JVI.00515-18. Print 2018 Jun 15.
5
Genome-wide characterization of long terminal repeat -retrotransposons in apple reveals the differences in heterogeneity and copy number between Ty1-copia and Ty3-gypsy retrotransposons.
J Integr Plant Biol. 2008 Sep;50(9):1130-9. doi: 10.1111/j.1744-7909.2008.00717.x.
6
Convergent evolution of ribonuclease h in LTR retrotransposons and retroviruses.
Mol Biol Evol. 2015 May;32(5):1197-207. doi: 10.1093/molbev/msv008. Epub 2015 Jan 19.
7
Genes of the Pseudoviridae (Ty1/copia retrotransposons).
Mol Biol Evol. 2002 Nov;19(11):1832-45. doi: 10.1093/oxfordjournals.molbev.a004008.
8
Retrotransposons and retroviruses: analysis of the envelope gene.
Mol Biol Evol. 1999 Sep;16(9):1198-207. doi: 10.1093/oxfordjournals.molbev.a026210.
9
Pyret, a Ty3/Gypsy retrotransposon in Magnaporthe grisea contains an extra domain between the nucleocapsid and protease domains.
Nucleic Acids Res. 2001 Oct 15;29(20):4106-13. doi: 10.1093/nar/29.20.4106.
10
Petunia vein-clearing virus: a plant pararetrovirus with the core sequences for an integrase function.
Virology. 1997 Sep 15;236(1):137-46. doi: 10.1006/viro.1997.8712.
引用本文的文献
1
GAG Protein of LTR Retrotransposon Forms Retrosome-like Cytoplasmic Granules and Activates Stress Response Genes.
Plants (Basel). 2025 Jun 20;14(13):1894. doi: 10.3390/plants14131894.
2
The nucleocapsid architecture and structural atlas of the prototype baculovirus define the hallmarks of a new viral realm.
Sci Adv. 2024 Dec 20;10(51):eado2631. doi: 10.1126/sciadv.ado2631. Epub 2024 Dec 18.
3
The Diverse Evolutionary Histories of Domesticated Metaviral Capsid Genes in Mammals.
Mol Biol Evol. 2024 Apr 2;41(4). doi: 10.1093/molbev/msae061.
4
The diverse evolutionary histories of domesticated metaviral capsid genes in mammals.
bioRxiv. 2023 Sep 17:2023.09.17.558119. doi: 10.1101/2023.09.17.558119.
5
The virome of the last eukaryotic common ancestor and eukaryogenesis.
Nat Microbiol. 2023 Jun;8(6):1008-1017. doi: 10.1038/s41564-023-01378-y. Epub 2023 May 1.
6
A bioactive phlebovirus-like envelope protein in a hookworm endogenous virus.
Sci Adv. 2022 May 13;8(19):eabj6894. doi: 10.1126/sciadv.abj6894. Epub 2022 May 11.
7
ICTV Virus Taxonomy Profile: 2021.
J Gen Virol. 2021 Nov;102(11). doi: 10.1099/jgv.0.001688.
8
Structure of a Ty1 restriction factor reveals the molecular basis of transposition copy number control.
Nat Commun. 2021 Sep 22;12(1):5590. doi: 10.1038/s41467-021-25849-0.
9
Viruses Defined by the Position of the Virosphere within the Replicator Space.
Microbiol Mol Biol Rev. 2021 Dec 15;85(4):e0019320. doi: 10.1128/MMBR.00193-20. Epub 2021 Sep 1.
10
Participation of Multifunctional RNA in Replication, Recombination and Regulation of Endogenous Plant Pararetroviruses (EPRVs).
Front Plant Sci. 2021 Jun 21;12:689307. doi: 10.3389/fpls.2021.689307. eCollection 2021.
本文引用的文献
1
Multiple origins of viral capsid proteins from cellular ancestors.
Proc Natl Acad Sci U S A. 2017 Mar 21;114(12):E2401-E2410. doi: 10.1073/pnas.1621061114. Epub 2017 Mar 6.
2
Nucleic and Amino Acid Sequences Support Structure-Based Viral Classification.
J Virol. 2017 Mar 29;91(8). doi: 10.1128/JVI.02275-16. Print 2017 Apr 15.
3
Structure of a Spumaretrovirus Gag Central Domain Reveals an Ancient Retroviral Capsid.
PLoS Pathog. 2016 Nov 9;12(11):e1005981. doi: 10.1371/journal.ppat.1005981. eCollection 2016 Nov.
4
Determinants of Genomic RNA Encapsidation in the Saccharomyces cerevisiae Long Terminal Repeat Retrotransposons Ty1 and Ty3.
Viruses. 2016 Jul 14;8(7):193. doi: 10.3390/v8070193.
5
Retrovirus maturation-an extraordinary structural transformation.
Curr Opin Virol. 2016 Jun;18:27-35. doi: 10.1016/j.coviro.2016.02.008. Epub 2016 Mar 22.
6
Origins and evolution of viruses of eukaryotes: The ultimate modularity.
Virology. 2015 May;479-480:2-25. doi: 10.1016/j.virol.2015.02.039. Epub 2015 Mar 12.
7
PROMALS3D: multiple protein sequence alignment enhanced with evolutionary and three-dimensional structural information.
Methods Mol Biol. 2014;1079:263-71. doi: 10.1007/978-1-62703-646-7_17.
8
Structure unifies the viral universe.
Annu Rev Biochem. 2012;81:795-822. doi: 10.1146/annurev-biochem-060910-095130. Epub 2012 Apr 5.
9
A widespread class of reverse transcriptase-related cellular genes.
Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20311-6. doi: 10.1073/pnas.1100266108. Epub 2011 Aug 29.
10
Order to the viral universe.
J Virol. 2010 Dec;84(24):12476-9. doi: 10.1128/JVI.01489-10. Epub 2010 Oct 6.
Zotero 插件