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碱基切除DNA修复途径是如何发挥作用的?

How are base excision DNA repair pathways deployed ?

作者信息

Thapar Upasna, Demple Bruce

机构信息

Department of Pharmacological Sciences, Stony Brook University, School of Medicine, Stony Brook, NY, USA.

出版信息

F1000Res. 2017 Mar 16;6:279. doi: 10.12688/f1000research.10538.1. eCollection 2017.

DOI:10.12688/f1000research.10538.1
PMID:28357058
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5357041/
Abstract

Since the discovery of the base excision repair (BER) system for DNA more than 40 years ago, new branches of the pathway have been revealed at the biochemical level by studies. Largely for technical reasons, however, the confirmation of these subpathways has been elusive. We review methods that have been used to explore BER in mammalian cells, indicate where there are important knowledge gaps to fill, and suggest a way to address them.

摘要

自40多年前发现DNA碱基切除修复(BER)系统以来,该途径的新分支已在生化水平上通过研究得以揭示。然而,很大程度上由于技术原因,这些亚途径的确认一直难以实现。我们回顾了用于探索哺乳动物细胞中BER的方法,指出了存在的重要知识空白,并提出了填补这些空白的方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6fea/5357041/ca250f73ba00/f1000research-6-11356-g0000.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6fea/5357041/ca250f73ba00/f1000research-6-11356-g0000.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6fea/5357041/ca250f73ba00/f1000research-6-11356-g0000.jpg

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How are base excision DNA repair pathways deployed ?碱基切除DNA修复途径是如何发挥作用的?
F1000Res. 2017 Mar 16;6:279. doi: 10.12688/f1000research.10538.1. eCollection 2017.
2
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Different DNA polymerases are involved in the short- and long-patch base excision repair in mammalian cells.不同的DNA聚合酶参与哺乳动物细胞中的短补丁和长补丁碱基切除修复。
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引用本文的文献

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Cooperation and interplay between base and nucleotide excision repair pathways: From DNA lesions to proteins.碱基切除修复途径与核苷酸切除修复途径之间的合作与相互作用:从DNA损伤到蛋白质
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Inherited mitochondrial genomic instability and chemical exposures.

本文引用的文献

1
Comet assay to measure DNA repair: approach and applications.彗星实验检测 DNA 修复:方法与应用。
Front Genet. 2014 Aug 25;5:288. doi: 10.3389/fgene.2014.00288. eCollection 2014.
2
Multiplexed DNA repair assays for multiple lesions and multiple doses via transcription inhibition and transcriptional mutagenesis.基于转录抑制和转录诱变的多重损伤和多重剂量的多重 DNA 修复分析。
Proc Natl Acad Sci U S A. 2014 May 6;111(18):E1823-32. doi: 10.1073/pnas.1401182111. Epub 2014 Apr 22.
3
A chemical and kinetic perspective on base excision repair of DNA.
遗传性线粒体基因组不稳定性与化学物质暴露。
Toxicology. 2017 Nov 1;391:75-83. doi: 10.1016/j.tox.2017.07.014. Epub 2017 Jul 26.
DNA碱基切除修复的化学与动力学视角
Acc Chem Res. 2014 Apr 15;47(4):1238-46. doi: 10.1021/ar400275a. Epub 2014 Mar 19.
4
Studying the organization of DNA repair by single-cell and single-molecule imaging.通过单细胞和单分子成像研究DNA修复的组织方式。
DNA Repair (Amst). 2014 Aug;20(100):32-40. doi: 10.1016/j.dnarep.2014.02.015. Epub 2014 Mar 12.
5
The essential comet assay: a comprehensive guide to measuring DNA damage and repair.彗星实验:测量 DNA 损伤与修复的综合指南
Arch Toxicol. 2013 Jun;87(6):949-68. doi: 10.1007/s00204-013-1070-0. Epub 2013 May 18.
6
Single-molecule DNA repair in live bacteria.活细菌中单分子 DNA 修复。
Proc Natl Acad Sci U S A. 2013 May 14;110(20):8063-8. doi: 10.1073/pnas.1301804110. Epub 2013 Apr 29.
7
The structural location of DNA lesions in nucleosome core particles determines accessibility by base excision repair enzymes.核小体核心颗粒中 DNA 损伤的结构位置决定了碱基切除修复酶的可及性。
J Biol Chem. 2013 May 10;288(19):13863-75. doi: 10.1074/jbc.M112.441444. Epub 2013 Mar 29.
8
Mammalian base excision repair: the forgotten archangel.哺乳动物碱基切除修复:被遗忘的大天使。
Nucleic Acids Res. 2013 Apr 1;41(6):3483-90. doi: 10.1093/nar/gkt076. Epub 2013 Feb 13.
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Dynamics of the DNA damage response: insights from live-cell imaging.活细胞成像技术揭示的 DNA 损伤反应动力学
Brief Funct Genomics. 2013 Mar;12(2):109-17. doi: 10.1093/bfgp/els059. Epub 2013 Jan 4.
10
Kinetics of endogenous mouse FEN1 in base excision repair.内源性小鼠 FEN1 在碱基切除修复中的动力学。
Nucleic Acids Res. 2012 Oct;40(18):9044-59. doi: 10.1093/nar/gks673. Epub 2012 Jul 18.