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固态中以氟为中心的“F...O”σ-空穴相互作用的表征。

Characterization of fluorine-centred `F...O' σ-hole interactions in the solid state.

作者信息

Sirohiwal Abhishek, Hathwar Venkatesha R, Dey Dhananjay, Regunathan Roshni, Chopra Deepak

机构信息

Crystallography and Crystal Chemistry Laboratory, Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal 462066, Madhya Pradesh, India.

Division of Physics, Faculty of Pure and Applied Sciences, University of Tsukuba, 1-1-1, Tennodai, Tsukuba, Ibaraki 305-8571, Japan.

出版信息

Acta Crystallogr B Struct Sci Cryst Eng Mater. 2017 Apr 1;73(Pt 2):140-152. doi: 10.1107/S2052520616017492. Epub 2017 Mar 14.

Abstract

In the current study, the crystal structure of 1-(3-nitrophenyl)-2,2,2-trifluoroethanone (A1) and (E)-4-((4-fluorophenyl) diazenyl)phenol (A2) has been analyzed for the characterization of the presence of a unique' and rare' intermolecular C(sp/sp)-F...O contact, which has been observed to play a significant role in the crystal packing. Theoretical charge-density calculations have been performed to study the nature and strength associated with the existence of this intermolecular F...O contact, wherein the F atom is attached to an sp-hybridized C atom in the case of A1 and to an sp hybridized carbon in the case of A2. The crystal packing of the former contains two electronically different' Csp-F...O contacts which are present across and in between the layers of molecules. In the latter case, it is characterized by the presence of a very short' (2.708 Å) and `highly directional' (168° at ∠C4-F1...O1 and 174° at ∠C10-O1...F1) Csp-F...O contact. According to the Cambridge Structural Database (CSD) study, it is a rare example in molecular crystals. Topological features of F...O contacts in the solid state were compared with the gas-phase models. The two-dimensional and three-dimensional static deformation density obtained from theoretical multipole modeling confirm the presence of a charge depleted region on the F atoms. Minimization of the electrostatic repulsion between like charges are observed through subtle arrangements in the electronic environment in two of the short intermolecular F...O contacts. These contacts were investigated using inputs from pair energy decomposition analysis, Bader's quantum theory of atoms in molecules (QTAIM), Hirshfeld surface analysis, delocalization index, reduced density gradient (RDG) plot, electrostatic potential surface and distributed atomic polarizability. The intermolecular energy decomposition (PIXEL) and RDG-NCI (non-covalent interaction) analysis of the F...O contacts establish the interaction to be dispersive in nature. The mutual polarization of an O atom by fluorine and vice versa provides real physical insights into the role of atomic polarizability in interacting atoms in molecules in crystals.

摘要

在当前研究中,对1-(3-硝基苯基)-2,2,2-三氟乙酮(A1)和(E)-4-((4-氟苯基)重氮基)苯酚(A2)的晶体结构进行了分析,以表征一种“独特”且“罕见”的分子间C(sp/sp)-F…O接触的存在,已观察到这种接触在晶体堆积中起重要作用。进行了理论电荷密度计算,以研究与这种分子间F…O接触的存在相关的性质和强度,其中在A1的情况下F原子连接到一个sp杂化的C原子,在A2的情况下连接到一个sp²杂化的碳原子。前者的晶体堆积包含两个“电子性质不同”的Csp-F…O接触,它们存在于分子层之间和层内。在后者的情况下,其特征是存在一个非常“短”(2.708 Å)且“高度定向”(∠C4-F1…O1处为168°,∠C10-O1…F1处为174°)的Csp-F…O接触。根据剑桥结构数据库(CSD)研究,这在分子晶体中是一个罕见的例子。将固态中F…O接触的拓扑特征与气相模型进行了比较。从理论多极建模获得的二维和三维静态变形密度证实了F原子上存在电荷耗尽区域。通过两个短分子间F…O接触中电子环境的微妙排列,观察到了同类电荷之间静电排斥的最小化。使用成对能量分解分析、巴德分子中的原子量子理论(QTAIM)、 Hirshfeld表面分析、离域指数、约化密度梯度(RDG)图、静电势表面和分布原子极化率的输入对这些接触进行了研究。F…O接触的分子间能量分解(PIXEL)和RDG-NCI(非共价相互作用)分析确定这种相互作用本质上是色散性的。氟对O原子的相互极化以及反之亦然,为晶体中分子内相互作用原子中原子极化率的作用提供了真实的物理见解。

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