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二氟和四氟苯甲酰胺晶体结构中涉及氟原子的新型超分子合成子的定量表征

Quantitative characterization of new supramolecular synthons involving fluorine atoms in the crystal structures of di- and tetrafluorinated benzamides.

作者信息

Mondal Pradip Kumar, Yadav Hare Ram, Choudhury Angshuman Roy, Chopra Deepak

机构信息

Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhauri, Bhopal 462066, India.

Department of Chemical Sciences, Indian Institute of Science Education and Research, Mohali, Sector 81, S.A.S. Nagar, Manauli PO, Mohali, Punjab, 140306, India.

出版信息

Acta Crystallogr B Struct Sci Cryst Eng Mater. 2017 Oct 1;73(Pt 5):805-819. doi: 10.1107/S2052520617006114. Epub 2017 Sep 14.

DOI:10.1107/S2052520617006114
PMID:28980984
Abstract

Strong hydrogen bonds play a significant role in crystal packing. In particular, the involvement of interactions involving fluorine in controlling the crystal packing requires appropriate attention, especially in the presence of other strong hydrogen bonds. In the present study, a detailed quantitative assessment has been performed of the nature, energetics and topological properties derived from the electron density in model compounds based on fluorinated benzamides (a total of 46 fluorine-substituted benzamides containing multiple fluorine atoms) in the solid state. The primary motivation in the design of such molecules is to enhance the acidity of the interacting H atoms in the presence of an increasing number of F atoms on the molecular scaffold, resulting in increased propensity towards the formation of intermolecular interactions involving organic fluorine. This exercise has resulted in the identification of new and frequently occurring supramolecular synthons involving F atoms in the packing of molecules in the solid state. The energetics associated with short and directional intermolecular Csp-H...F-Csp interactions with significantly high electrostatic contributions is noteworthy, and the topological analysis reveals the bonding character of these ubiquitous interactions in crystal packing in addition to the presence of Csp-F...F-Csp contacts.

摘要

强氢键在晶体堆积中起着重要作用。特别是,涉及氟的相互作用在控制晶体堆积方面的作用需要得到适当关注,尤其是在存在其他强氢键的情况下。在本研究中,基于固态的氟化苯甲酰胺(总共46种含多个氟原子的氟取代苯甲酰胺),对模型化合物中电子密度所衍生的性质、能量学和拓扑性质进行了详细的定量评估。设计此类分子的主要动机是在分子骨架上存在越来越多氟原子的情况下增强相互作用氢原子的酸度,从而增加形成涉及有机氟的分子间相互作用的倾向。这项工作已导致在固态分子堆积中鉴定出涉及氟原子的新的且频繁出现的超分子合成子。与具有显著高静电贡献的短程且有方向性的分子间Csp - H...F - Csp相互作用相关的能量学值得关注,拓扑分析揭示了这些在晶体堆积中普遍存在的相互作用的键合特征以及Csp - F...F - Csp接触的存在。

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