Tsubomoto Yutaka, Hayashi Satoko, Nakanishi Waro, Sasamori Takahiro, Tokitoh Norihiro
Department of Material Science and Chemistry, Faculty of Systems Engineering, Wakayama University, 930 Sakaedani, Wakayama 640-8510, Japan.
Institute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Japan.
Acta Crystallogr B Struct Sci Cryst Eng Mater. 2017 Apr 1;73(Pt 2):265-275. doi: 10.1107/S205252061700364X. Epub 2017 Mar 29.
The nature of EX σ(4c-6e) of the X--E--E--X type is elucidated for 1-(8-XCH)E-E(CHX-8')-1' [(1) E, X = S, Cl; (2) S, Br; (3) Se, Cl; (4) Se, Br] after structural determination of (1), (3) and (4), together with model A [MeX---E(H)-E(H)---XMe (E = S and Se; X = Cl and Br)]. The quantum theory of atoms-in-molecules dual functional analysis (QTAIM-DFA) is applied. The total electron energy densities H(r) are plotted versus H(r) - V(r)/2 for the interactions at the bond critical points (BCPs; ), where V(r) show the potential energy densities at the BCPs. Data for the perturbed structures around the fully optimized structures are employed for the plots, in addition to those of the fully optimized structures. The plots were analysed using the polar coordinate (R, θ) representation of the data of the fully optimized structures. Data containing the perturbed structures were analysed by (θ, κ), where θ corresponds to the tangent line of the plot and κ is the curvature. Whereas (R, θ) shows the static nature, (θ, κ) represents the dynamic nature of interactions. E--E are all classified as shared shell (S) interactions for (1)-(4) and as weak covalent (Cov-w) in nature (S/Cov-w). The nature of pure CS (closed shell)/typical-HB (hydrogen bond) with no covalency is predicted for E--X in (1) and (3), regular CS/typical-HB nature with covalency is predicted for (4), and an intermediate nature is predicted for (2). The NBO energies evaluated for E-*-X in (1)-(4) are substantially larger than those in model A due the shortened length at the naphthalene 1,8-positions. The nature of EX of σ(4c-6e) is well elucidated via QTAIM-DFA.
在确定了(1)、(3)和(4)的结构后,结合模型A [MeX---E(H)-E(H)---XMe (E = S和Se;X = Cl和Br)],阐明了X--E--E--X型的EX σ(4c - 6e)的性质,其中(1) E, X = S, Cl;(2) S, Br;(3) Se, Cl;(4) Se, Br。应用了分子中的原子量子理论双功能分析(QTAIM-DFA)。在键临界点(BCPs;)处,将总电子能量密度H(r)与H(r) - V(r)/2绘制在一起,其中V(r)表示BCPs处的势能密度。除了完全优化结构的数据外,还使用了完全优化结构周围的微扰结构的数据进行绘图。使用完全优化结构数据的极坐标(R, θ)表示对绘图进行分析。包含微扰结构的数据通过(θ, κ)进行分析,其中θ对应于绘图的切线,κ是曲率。虽然(R, θ)显示静态性质,但(θ, κ)表示相互作用的动态性质。对于(1)-(4),E--E均被归类为共享壳(S)相互作用,本质上为弱共价(Cov-w)(S/Cov-w)。预测(1)和(3)中E--X具有无共价性的纯闭壳(CS)/典型氢键(HB)性质,(4)具有有共价性的规则CS/典型HB性质,(2)具有中间性质。由于萘1,8位的长度缩短,(1)-(4)中E-*-X的NBO能量评估值明显大于模型A中的值。通过QTAIM-DFA很好地阐明了σ(4c - 6e)的EX性质。