Faculty of Systems Engineering, Wakayama University, 930 Sakaedani, Wakayama 640-8510, Japan.
Molecules. 2018 Feb 17;23(2):443. doi: 10.3390/molecules23020443.
The nature of the E-E' bonds (E, E' = S and Se) in glutathione disulfide () and derivatives -, respectively, was elucidated by applying quantum theory of atoms-in-molecules (QTAIM) dual functional analysis (QTAIM-DFA), to clarify the basic contribution of E-E' in the biological redox process, such as the glutathione peroxidase process. Five most stable conformers - were obtained, after applying the Monte-Carlo method then structural optimizations. In QTAIM-DFA, total electron energy densities () are plotted versus () - ()/2 at bond critical points (BCPs), where () are potential energy densities at BCPs. Data from the fully optimized structures correspond to the static nature. Those containing perturbed structures around the fully optimized one in the plot represent the dynamic nature of interactions. The behavior of E-E' was examined carefully. Whereas E-E' in - were all predicted to have the weak covalent nature of the shared shell interactions, two different types of S-S were detected in , depending on the conformational properties. Contributions from the intramolecular non-covalent interactions to stabilize the conformers were evaluated. An inverse relationship was observed between the stability of a conformer and the strength of E-E' in the conformer, of which reason was discussed.
通过应用分子中原子量子理论(QTAIM)双功能分析(QTAIM-DFA),阐明了谷胱甘肽二硫化物()及其衍生物中 E-E' 键(E,E'=S 和 Se)的性质,以澄清 E-E' 在生物氧化还原过程中的基本贡献,如谷胱甘肽过氧化物酶过程。应用蒙特卡罗法和结构优化后,得到了 5 种最稳定的构象 -。在 QTAIM-DFA 中,在键临界点(BCP)处绘制总电子能量密度()与()-()/2 的关系,其中()是 BCP 处的势能密度。完全优化结构的数据对应于静态性质。图中包含围绕完全优化结构的扰动结构的数据代表了相互作用的动态性质。仔细检查了 E-E'的行为。虽然 - 中的 E-E' 均被预测为具有共享壳相互作用的弱共价性质,但在中检测到两种不同类型的 S-S,这取决于构象特性。评估了分子内非共价相互作用对稳定构象的贡献。观察到构象稳定性与构象中 E-E'强度之间存在反比关系,讨论了其原因。