Jin Xiaoli, Chen Xiaoling, Xiao Liang, Shi Chunhai, Chen Liang, Yu Bin, Yi Zili, Yoo Ji Hye, Heo Kweon, Yu Chang Yeon, Yamada Toshihiko, Sacks Erik J, Peng Junhua
Department of Agronomy & The Key Laboratory of Crop Germplasm Resource of Zhejiang Province, Zhejiang University, Hangzhou, China.
Hunan Provincial Key Laboratory for Germplasm Innovation and Utilization of Crop, Hunan Agricultural University, Hunan Changsha, China.
PLoS One. 2017 Apr 3;12(4):e0171360. doi: 10.1371/journal.pone.0171360. eCollection 2017.
The feasibility of visible and near infrared (NIR) spectroscopy as tool to classify Miscanthus samples was explored in this study. Three types of Miscanthus plants, namely, M. sinensis, M. sacchariflorus and M. fIoridulus, were analyzed using a NIR spectrophotometer. Several classification models based on the NIR spectra data were developed using line discriminated analysis (LDA), partial least squares (PLS), least squares support vector machine regression (LSSVR), radial basis function (RBF) and neural network (NN). The principal component analysis (PCA) presented rough classification with overlapping samples, while the models of Line_LSSVR, RBF_LSSVR and RBF_NN presented almost same calibration and validation results. Due to the higher speed of Line_LSSVR than RBF_LSSVR and RBF_NN, we selected the line_LSSVR model as a representative. In our study, the model based on line_LSSVR showed higher accuracy than LDA and PLS models. The total correct classification rates of 87.79 and 96.51% were observed based on LDA and PLS model in the testing set, respectively, while the line_LSSVR showed 99.42% of total correct classification rate. Meanwhile, the lin_LSSVR model in the testing set showed correct classification rate of 100, 100 and 96.77% for M. sinensis, M. sacchariflorus and M. fIoridulus, respectively. The lin_LSSVR model assigned 99.42% of samples to the right groups, except one M. fIoridulus sample. The results demonstrated that NIR spectra combined with a preliminary morphological classification could be an effective and reliable procedure for the classification of Miscanthus species.
本研究探讨了可见和近红外(NIR)光谱作为芒属样本分类工具的可行性。使用近红外分光光度计对三种芒属植物,即芒草、荻和五节芒进行了分析。基于近红外光谱数据,利用线性判别分析(LDA)、偏最小二乘法(PLS)、最小二乘支持向量机回归(LSSVR)、径向基函数(RBF)和神经网络(NN)建立了几种分类模型。主成分分析(PCA)对样本有重叠的情况进行了粗略分类,而线性LSSVR、RBF_LSSVR和RBF_NN模型的校准和验证结果几乎相同。由于线性LSSVR比RBF_LSSVR和RBF_NN速度更快,我们选择线性LSSVR模型作为代表。在我们的研究中,基于线性LSSVR的模型比LDA和PLS模型具有更高的准确性。在测试集中,基于LDA和PLS模型的总正确分类率分别为87.79%和96.51%,而线性LSSVR的总正确分类率为99.42%。同时,测试集中的线性LSSVR模型对芒草、荻和五节芒的正确分类率分别为100%、100%和96.77%。除了一个五节芒样本外,线性LSSVR模型将99.42%的样本正确归类。结果表明,近红外光谱结合初步形态分类可能是芒属物种分类的一种有效且可靠的方法。