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一种基于总体的方法用于分析激素数据时间序列中的脉冲。

A population-based approach to analyzing pulses in time series of hormone data.

作者信息

Horton K W, Carlson N E, Grunwald G K, Mulvahill M J, Polotsky A J

机构信息

HQ USAFA/DFMS, 2354 Fairchild Dr, USAF Academy, 80840, CO, U.S.A.

Department of Biostatistics and Informatics, University of Colorado Anschutz Medical Campus, 13001 E. 17th PL, MS B119, Aurora, 80045, CO, U.S.A.

出版信息

Stat Med. 2017 Jul 20;36(16):2576-2589. doi: 10.1002/sim.7292. Epub 2017 Apr 9.

Abstract

Studies of reproductive physiology involve rapid sampling protocols that result in time series of hormone concentrations. The signature pattern in these times series is pulses of hormone release. Various statistical models for quantifying the pulsatile release features exist. Currently these models are fitted separately to each individual and the resulting estimates averaged to arrive at post hoc population-level estimates. When the signal-to-noise ratio is small or the time of observation is short (e.g., 6 h), this two-stage estimation approach can fail. This work extends the single-subject modelling framework to a population framework similar to what exists for complex pharamacokinetics data. The goal is to leverage information across subjects to more clearly identify pulse locations and improve estimation of other model parameters. This modelling extension has proven difficult because the pulse number and locations are unknown. Here, we show that simultaneously modelling a group of subjects is computationally feasible in a Bayesian framework using a birth-death Markov chain Monte Carlo estimation algorithm. Via simulation, we show that this population-based approach reduces the false positive and negative pulse detection rates and results in less biased estimates of population-level parameters of frequency, pulse size, and hormone elimination. We then apply the approach to a reproductive study in healthy women where approximately one-third of the 21 subjects in the study did not have appropriate fits using the single-subject fitting approach. Using the population model produced more precise, biologically plausible estimates of all model parameters. Copyright © 2017 John Wiley & Sons, Ltd.

摘要

生殖生理学研究涉及快速采样方案,这些方案会产生激素浓度的时间序列。这些时间序列中的特征模式是激素释放脉冲。存在多种用于量化脉冲式释放特征的统计模型。目前,这些模型是分别对每个个体进行拟合,然后将所得估计值进行平均,以得出事后的群体水平估计值。当信噪比小或观察时间短(例如6小时)时,这种两阶段估计方法可能会失败。这项工作将单个体建模框架扩展到了类似于复杂药代动力学数据所存在的群体框架。目标是利用跨个体的信息来更清晰地识别脉冲位置,并改进其他模型参数的估计。这种建模扩展已被证明很困难,因为脉冲数量和位置是未知的。在这里,我们表明,在贝叶斯框架下使用生死马尔可夫链蒙特卡罗估计算法对一组个体进行同时建模在计算上是可行的。通过模拟,我们表明这种基于群体的方法降低了假阳性和假阴性脉冲检测率,并使频率、脉冲大小和激素消除等群体水平参数的估计偏差更小。然后,我们将该方法应用于一项针对健康女性的生殖研究,在该研究中约三分之一的21名受试者使用单个体拟合方法时没有得到合适的拟合结果。使用群体模型对所有模型参数产生了更精确、生物学上更合理的估计。版权所有© 2017约翰·威利父子有限公司。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f00b/5616190/24f158d859e7/nihms904394f1.jpg

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