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来自天蓝色链霉菌的卓别林E的pH依赖性组装。

The pH-dependent assembly of Chaplin E from Streptomyces coelicolor.

作者信息

Dokouhaki Mina, Hung Andrew, Day Li, Gras Sally L

机构信息

The Melbourne School of Engineering and Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Parkville, VIC 3010, Australia.

School of Science, RMIT University, VIC 3001, Australia.

出版信息

J Struct Biol. 2017 May;198(2):82-91. doi: 10.1016/j.jsb.2017.04.004. Epub 2017 Apr 8.

Abstract

Chaplin E, is one of five self-assembling peptides secreted by Streptomyces coelicolor that assist aerial growth by lowering the surface tension of water. Although the surface activity of a mixture of chaplin peptides has observed to depend on pH, it is unclear how the solvent environment (i.e. pH) influences the structure, assembly and subsequent functionality of these individual peptides. In this study, the conformation and fibril forming propensity of the Chaplin E peptide was assessed as a function of pH using a combination of experimental measurements and molecular dynamics simulations. At an acidic pH of 3.0, Chaplin E retained a random coil structure, whereas at the isoelectric point of 6.7 or a basic pH of 10.0, Chaplin E rapidly formed amyloid fibrils rich in β-sheet structure with high efficiency (>93%). Molecular dynamics simulations indicate the persistence of greater α-helical content at the N-terminus at high pH; this is likely partly due to the lack of electrostatic repulsion between residues His6 and Lys10. Since fibril formation was observed at high but not at low pH, we propose that the presence of an N-terminal α-helix in the monomeric form of Chaplin E is required for aggregation and conversion to β-amyloid fibrils. The pH sensitivity of Chaplin E peptide structure provides a route to control peptide assembly and may be important for the physiological function of this peptide, as a surface active agent in the transition from vegetative to aerial growth and could assist Streptomyces coelicolor in response to environmental fluctuations in pH.

摘要

查普林E是天蓝色链霉菌分泌的五种自组装肽之一,通过降低水的表面张力来促进气生菌丝生长。尽管已观察到查普林肽混合物的表面活性取决于pH值,但尚不清楚溶剂环境(即pH值)如何影响这些单个肽的结构、组装及后续功能。在本研究中,结合实验测量和分子动力学模拟,评估了查普林E肽的构象和形成原纤维的倾向随pH值的变化情况。在酸性pH值3.0时,查普林E保持无规卷曲结构,而在6.7的等电点或碱性pH值10.0时,查普林E能高效(>93%)快速形成富含β-折叠结构的淀粉样原纤维。分子动力学模拟表明,在高pH值下,N端的α-螺旋含量更高;这可能部分是由于His6和Lys10残基之间缺乏静电排斥。由于在高pH值而非低pH值下观察到原纤维形成,我们提出,查普林E单体形式中N端α-螺旋的存在是聚集并转化为β-淀粉样原纤维所必需的。查普林E肽结构的pH敏感性为控制肽的组装提供了一条途径,这对于该肽在从营养生长向气生生长转变过程中作为表面活性剂的生理功能可能很重要,并且可以帮助天蓝色链霉菌应对pH值的环境波动。

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