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北美松树林中皮质菌类真菌的调查揭示了其高度多样性、序列数据库样本不足以及可能形成外生菌根的物种。

Survey of corticioid fungi in North American pinaceous forests reveals hyperdiversity, underpopulated sequence databases, and species that are potentially ectomycorrhizal.

作者信息

Rosenthal Lisa M, Larsson Karl-Henrik, Branco Sara, Chung Judy A, Glassman Sydney I, Liao Hui-Ling, Peay Kabir G, Smith Dylan P, Talbot Jennifer M, Taylor John W, Vellinga Else C, Vilgalys Rytas, Bruns Thomas D

机构信息

a Department of Plant Pathology , University of California Davis , Davis , California 95818.

b Natural History Museum , University of Oslo , Blindern , 0318 Oslo , Norway.

出版信息

Mycologia. 2017;109(1):115-127. doi: 10.1080/00275514.2017.1281677. Epub 2017 Jan 19.

DOI:10.1080/00275514.2017.1281677
PMID:28402791
Abstract

The corticioid fungi are commonly encountered, highly diverse, ecologically important, and understudied. We collected specimens in 60 pine and spruce forests across North America to survey corticioid fungal frequency and distribution and to compile an internal transcribed spacer (ITS) database for the group. Sanger sequences from the ITS region of vouchered specimens were compared with sequences on GenBank and UNITE, and with high-throughput sequence data from soil and roots taken at the same sites. Out of 425 high-quality Sanger sequences from vouchered specimens, we recovered 223 distinct operational taxonomic units (OTUs), the majority of which could not be assigned to species by matching to the BLAST database. Corticioid fungi were found to be hyperdiverse, as supported by the observations that nearly two-thirds of our OTUs were represented by single collections and species estimator curves showed steep slopes with no plateaus. We estimate that 14.8-24.7% of our voucher-based OTUs are likely to be ectomycorrhizal (EM). Corticioid fungi recovered from the soil formed a different community assemblage, with EM taxa accounting for 40.5-58.6% of OTUs. We compared basidioma sequences with EM root tips from our data, GenBank, or UNITE, and with this approach, we reiterate existing speculations that Trechispora stellulata is EM. We found that corticioid fungi have a significant distance-decay pattern, adding to the literature supporting fungi as having geographically structured communities. This study provides a first view of the diversity of this important group across North American pine forests, but much of the biology and taxonomy of these diverse, important, and widespread fungi remains unknown.

摘要

革菌纲真菌常见、种类高度多样、具有重要生态意义且研究不足。我们在北美60片松树林和云杉林中采集标本,以调查革菌纲真菌的频率和分布,并为该类群编制一个内转录间隔区(ITS)数据库。将凭证标本ITS区域的桑格测序序列与GenBank和UNITE上的序列进行比较,并与同一地点土壤和根系的高通量序列数据进行比较。在来自凭证标本的425条高质量桑格序列中,我们获得了223个不同的操作分类单元(OTU),其中大多数通过与BLAST数据库比对无法鉴定到种。革菌纲真菌具有高度多样性,这一观点得到以下观察结果的支持:近三分之二的OTU仅由单一采集代表,且物种估计曲线显示斜率陡峭且无平台期。我们估计,基于凭证的OTU中有14.8 - 24.7%可能是外生菌根(EM)真菌。从土壤中获得的革菌纲真菌形成了不同的群落组合,其中EM类群占OTU的40.5 - 58.6%。我们将担子果序列与来自我们的数据、GenBank或UNITE的EM根尖进行比较,通过这种方法,我们重申了关于星状毛革菌是EM真菌的现有推测。我们发现革菌纲真菌具有显著的距离衰减模式,这进一步支持了真菌具有地理结构群落的文献观点。本研究首次展示了北美松树林中这一重要类群的多样性,但这些多样、重要且分布广泛的真菌的许多生物学和分类学特征仍不为人知。

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