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Molecular-Based Diversity Studies and Field Surveys Are Not Mutually Exclusive: On the Importance of Integrated Methodologies in Mycological Research.基于分子的多样性研究与实地调查并非相互排斥:论综合方法在真菌学研究中的重要性。
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Five new species of (Fungi, Laboulbeniales) from tropical American bat flies (Diptera, Streblidae), revealed by morphology and phylogenetic reconstruction.通过形态学和系统发育重建揭示的来自热带美洲蝙蝠蝇(双翅目,蝠蝇科)的5种新的(真菌,虫囊菌目)物种。
Mycologia. 2023 Sep-Oct;115(5):714-737. doi: 10.1080/00275514.2023.2230114. Epub 2023 Aug 17.
6
Extensive intragenomic variation in the internal transcribed spacer region of fungi.真菌内部转录间隔区的广泛基因组内变异。
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基于单株的物种名称与真菌稀有性:数量真的重要吗?

Singleton-based species names and fungal rarity: Does the number really matter?

作者信息

Cazabonne Jonathan, Walker Allison K, Lesven Jonathan, Haelewaters Danny

机构信息

Ecology Research Group of Abitibi RCM, Forest Research Institute, Université du Québec en Abitibi-Témiscamingue, Amos, QC, J9T 2L8, Canada.

Centre for Forest Research, Université du Québec à Montréal, Montreal, QC, H3C 3P8, Canada.

出版信息

IMA Fungus. 2024 Mar 20;15(1):7. doi: 10.1186/s43008-023-00137-2.

DOI:10.1186/s43008-023-00137-2
PMID:38504339
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10953280/
Abstract

Fungi are among the least known organisms on earth, with an estimated number of species between 1.5 and 10 million. This number is expected to be refined, especially with increasing knowledge about microfungi in undersampled habitats and increasing amounts of data derived from environmental DNA sequencing. A significant proportion of newly generated sequences fail to match with already named species, and thus represent what has been referred to as fungal "dark taxa". Due to the challenges associated with observing, identifying, and preserving sporophores, many macro- and microfungal species are only known from a single collection, specimen, isolate, and/or sequence-a singleton. Mycologists are consequently used to working with "rare" sequences and specimens. However, rarity and singleton phenomena lack consideration and valorization in fungal studies. In particular, the practice of publishing new fungal species names based on a single specimen remains a cause of debate. Here, we provide some elements of reflection on this issue in the light of the specificities of the fungal kingdom and global change context. If multiple independent sources of data support the existence of a new taxon, we encourage mycologists to proceed with formal description, irrespective of the number of specimens at hand. Although the description of singleton-based species may not be considered best practice, it does represent responsible science in the light of closing the Linnean biodiversity shortfall.

摘要

真菌是地球上最鲜为人知的生物之一,估计物种数量在150万至1000万之间。随着对采样不足栖息地中的微真菌的了解不断增加,以及环境DNA测序产生的数据量不断增多,这个数字有望得到完善。相当一部分新生成的序列无法与已命名的物种匹配,因此代表了所谓的真菌“暗类群”。由于观察、鉴定和保存子实体存在挑战,许多大型和微型真菌物种仅从单一的采集物、标本、分离物和/或序列(单例)中得知。因此,真菌学家习惯处理“罕见”的序列和标本。然而,在真菌研究中,稀有性和单例现象缺乏考量和重视。特别是,基于单个标本发表新真菌物种名称的做法仍然存在争议。在此,我们根据真菌界的特殊性和全球变化背景,提供一些关于这个问题的思考要点。如果多个独立数据源支持新分类群的存在,我们鼓励真菌学家进行正式描述,无论手头标本的数量如何。尽管基于单例的物种描述可能不被视为最佳做法,但鉴于弥合林奈生物多样性缺口,这确实代表了负责任的科学。