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利用新型微卫星标记和线粒体DNA基因序列对日本柞蚕(Antheraea yamamai,鳞翅目:天蚕蛾科)进行群体遗传特征分析。

Population genetic characterization of the Japanese oak silkmoth, Antheraea yamamai (Lepidoptera: Saturniidae), using novel microsatellite markers and mitochondrial DNA gene sequences.

作者信息

Kim S R, Kim K Y, Jeong J S, Kim M J, Kim K-H, Choi K H, Kim I

机构信息

Department of Agricultural Biology, National Academy of Agricultural Science, Rural Development Administration, Wanju-gun, Republic of Korea.

College of Agriculture & Life Sciences, Chonnam National University, 300 Yongbong-dong, Buk-gu, Gwangju, Republic of Korea.

出版信息

Genet Mol Res. 2017 Apr 13;16(2):gmr-16-02-gmr.16029608. doi: 10.4238/gmr16029608.

Abstract

The Japanese oak silkmoth, Antheraea yamamai Guérin-Méneville, 1861 (Lepidoptera: Saturniidae), is an important natural resource of industrial value for silk fiber production. Owing to a lack of geographic and population genetic information, systematic domestication of An. yamamai has not been possible yet. In this study, 10 microsatellite markers developed using next-generation sequencing and two mitochondrial DNA (mtDNA) gene sequences (COI and ND4) were used to investigate the genetic variation and geographic structure of An. yamamai populations in South Korea. The two mtDNA gene sequences revealed very low total genetic variation and, consequently, low geographic variation, validating the use of more variable molecular markers. Genotyping of 76 An. yamamai individuals from nine localities in South Korea showed that the observed number of alleles at each locus ranged from 3 to 26, the polymorphism information content was 0.2990-0.9014, the observed and expected heterozygosities were 0.3252-0.9076 and 0.2500-0.9054, respectively, and F was -0.654-0.520. The population-based F, F, R, and global Mantel tests all suggested that the An. yamamai populations were overall well-interconnected, suggesting that any population can be used as a genetic source for domestication. Nevertheless, STRUCTURE analyses using microsatellite data and mtDNA sequences indicated the presence of two genetic pools in many populations, although a plausible explanation for this observation requires further studies.

摘要

日本柞蚕,即山蚕(Antheraea yamamai Guérin-Méneville,1861年)(鳞翅目:大蚕蛾科),是一种具有重要工业价值的天然资源,可用于生产丝纤维。由于缺乏地理和种群遗传信息,目前尚无法对山蚕进行系统驯化。在本研究中,利用下一代测序技术开发的10个微卫星标记和两个线粒体DNA(mtDNA)基因序列(COI和ND4),对韩国山蚕种群的遗传变异和地理结构进行了研究。两个mtDNA基因序列显示出极低的总遗传变异,因此地理变异也很低,这验证了使用更多可变分子标记的合理性。对来自韩国9个地区的76只山蚕个体进行基因分型,结果表明,每个位点观察到的等位基因数在3至26之间,多态性信息含量为0.2990 - 0.9014,观察到的杂合度和预期杂合度分别为0.3252 - 0.9076和0.2500 - 0.9054,F值为 - 0.654 - 0.520。基于种群的F、F、R和全局Mantel检验均表明,山蚕种群总体上联系紧密,这表明任何种群都可作为驯化的遗传来源。然而,使用微卫星数据和mtDNA序列进行的STRUCTURE分析表明,许多种群中存在两个基因库,尽管对此观察结果的合理解释仍需进一步研究。

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