Bonanata Jenner, Turell Lucía, Antmann Laura, Ferrer-Sueta Gerardo, Botasini Santiago, Méndez Eduardo, Alvarez Beatriz, Coitiño E Laura
Laboratorio de Química Teórica y Computacional (LQTC), Instituto de Química Biológica, Facultad de Ciencias, Universidad de la República, Iguá 4225, Montevideo 11400, Uruguay; Laboratorio de Enzimología, Instituto de Química Biológica, Facultad de Ciencias, Universidad de la República, Iguá 4225, Montevideo 11400, Uruguay.
Laboratorio de Enzimología, Instituto de Química Biológica, Facultad de Ciencias, Universidad de la República, Iguá 4225, Montevideo 11400, Uruguay.
Free Radic Biol Med. 2017 Jul;108:952-962. doi: 10.1016/j.freeradbiomed.2017.04.021. Epub 2017 Apr 21.
Human serum albumin (HSA) has a single reduced cysteine residue, Cys34, whose acidity has been controversial. Three experimental approaches (pH-dependence of reactivity towards hydrogen peroxide, ultraviolet titration and infrared spectroscopy) are used to determine that the pK value in delipidated HSA is 8.1±0.2 at 37°C and 0.1M ionic strength. Molecular dynamics simulations of HSA in the sub-microsecond timescale show that while sulfur exposure to solvent is limited and fluctuating in the thiol form, it increases in the thiolate, stabilized by a persistent hydrogen-bond (HB) network involving Tyr84 and bridging waters to Asp38 and Gln33 backbone. Insight into the mechanism of Cys34 oxidation by HO is provided by ONIOM(QM:MM) modeling including quantum water molecules. The reaction proceeds through a slightly asynchronous S2 transition state (TS) with calculated ΔG and ΔH barriers at 298K of respectively 59 and 54kJmol (the latter within chemical accuracy from the experimental value). A post-TS proton transfer leads to HSA-SO and water as products. The structured reaction site cages HO, which donates a strong HB to the thiolate. Loss of this HB before reaching the TS modulates Cys34 nucleophilicity and contributes to destabilize HO. The lack of reaction-site features required for differential stabilization of the TS (positive charges, HO HB strengthening) explains the striking difference in kinetic efficiency for the same reaction in other proteins (e.g. peroxiredoxins). The structured HB network surrounding HSA-SH with sequestered waters carries an entropic penalty on the barrier height. These studies contribute to deepen the understanding of the reactivity of HSA-SH, the most abundant thiol in human plasma, and in a wider perspective, provide clues on the key aspects that modulate thiol reactivity against HO.
人血清白蛋白(HSA)有一个单一的还原型半胱氨酸残基,即Cys34,其酸度一直存在争议。采用三种实验方法(对过氧化氢反应性的pH依赖性、紫外滴定和红外光谱)来确定在37°C和0.1M离子强度下脱脂HSA中的pK值为8.1±0.2。在亚微秒时间尺度上对HSA进行分子动力学模拟表明,虽然硫以硫醇形式暴露于溶剂的情况有限且波动,但在硫醇盐形式下会增加,这通过一个涉及Tyr84以及连接到Asp38和Gln33主链的桥连水的持久氢键(HB)网络得以稳定。通过包括量子水分子的ONIOM(QM:MM)模型对HO氧化Cys34的机制进行了深入研究。反应通过一个略微异步的S2过渡态(TS)进行,在298K时计算得到的ΔG和ΔH势垒分别为59和54kJ/mol(后者与实验值的化学精度相符)。TS后的质子转移产生HSA - SO和水作为产物。HO被结构化的反应位点包围,它向硫醇盐提供一个强HB。在到达TS之前该HB的丧失调节了Cys34的亲核性,并导致HO不稳定。缺乏对TS进行差异稳定所需的反应位点特征(正电荷、HO HB增强)解释了同一反应在其他蛋白质(如过氧化物酶)中动力学效率的显著差异。围绕HSA - SH并隔离水的结构化HB网络对势垒高度带来了熵罚。这些研究有助于加深对HSA - SH(人血浆中最丰富的硫醇)反应性的理解,并且从更广泛的角度为调节硫醇对HO反应性的关键方面提供了线索。