Jia Dongya, Jolly Mohit Kumar, Harrison William, Boareto Marcelo, Ben-Jacob Eshel, Levine Herbert
Center for Theoretical Biological Physics, Rice University, Houston, TX 77005-1827, United States of America. Program in Systems, Synthetic and Physical Biology, Rice University, Houston, TX 77005-1827, United States of America.
Phys Biol. 2017 May 23;14(3):035007. doi: 10.1088/1478-3975/aa6f90.
Many cell-fate decisions during embryonic development are governed by a motif comprised of two transcription factors (TFs) A and B that mutually inhibit each other and may self-activate. This motif, called as a self-activating toggle switch (SATS), can typically have three stable states (phenotypes)-two corresponding to differentiated cell fates, each of which has a much higher level of one TF than the other-[Formula: see text] or [Formula: see text]-and the third state corresponding to an 'undecided' stem-like state with similar levels of both A and B-[Formula: see text]. Furthermore, two or more SATSes can be coupled together in various topologies in different contexts, thereby affecting the coordination between multiple cellular decisions. However, two questions remain largely unanswered: (a) what governs the co-existence and relative stability of these three stable states? (b) What orchestrates the decision-making of coupled SATSes? Here, we first demonstrate that the co-existence and relative stability of the three stable states in an individual SATS can be governed by the relative strength of self-activation, external signals activating and/or inhibiting A and B, and mutual degradation between A and B. Simultaneously, we investigate the effects of these factors on the decision-making of two coupled SATSes. Our results offer novel understanding into the operating principles of individual and coupled tristable self-activating toggle switches (SATSes) regulating cellular differentiation and can yield insights into synthesizing three-way genetic circuits and understanding of cellular reprogramming.
胚胎发育过程中的许多细胞命运决定由一种基序控制,该基序由两个相互抑制且可能自我激活的转录因子(TFs)A和B组成。这种基序被称为自激活拨动开关(SATS),通常可以有三种稳定状态(表型)——两种对应于分化的细胞命运,每种状态下一个TF的水平比另一个TF高得多——[公式:见正文]或[公式:见正文],第三种状态对应于A和B水平相似的“未决定”的干细胞样状态——[公式:见正文]。此外,在不同情况下,两个或更多的SATS可以以各种拓扑结构耦合在一起,从而影响多个细胞决定之间的协调。然而,两个问题在很大程度上仍未得到解答:(a)是什么决定了这三种稳定状态的共存和相对稳定性?(b)是什么协调了耦合SATS的决策?在这里,我们首先证明,单个SATS中三种稳定状态的共存和相对稳定性可以由自我激活、激活和/或抑制A和B的外部信号以及A和B之间的相互降解的相对强度来控制。同时,我们研究了这些因素对两个耦合SATS决策的影响。我们的结果为调节细胞分化的单个和耦合三稳态自激活拨动开关(SATS)的工作原理提供了新的理解,并有助于深入了解合成三向遗传电路和细胞重编程。