Use of psoralen-modified oligonucleotides to trap three-stranded RecA-DNA complexes and repair of these cross-linked complexes by ABC excinuclease.

A series of site-specifically cross-linked, three-stranded complexes has been prepared using the RecA protein, form I (covalently closed and negatively supercoiled) pUC19 plasmid, and eight psoralen-monoadducted oligonucleotides between 30 and 107 residues in length. Complexes formed much less efficiently if linearized pUC19 was used as the duplex substrate. Quantitative analysis indicates that although RecA is able to utilize a 30-mer in its homologous pairing reaction, incorporation at 50% efficiency requires a single-stranded substrate at least 50 residues long. These three-stranded complexes have been used to study the action mechanism for cross-link repair by ABC excinuclease, and the results are consistent with the recent model of Van Houten, B., Gamper, H., Holbrook, S. R., Hearst, J. E., and Sancar, A. (1986b) Proc. Natl. Acad. Sci. U. S. A. 83, 8077-8081.