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对来自监测区域的H7N8禽流感病毒进行深度测序,结果表明2016年期间H7N8高致病性禽流感仅限于印第安纳州的一个爆发农场。

Deep sequencing of H7N8 avian influenza viruses from surveillance zone supports H7N8 high pathogenicity avian influenza was limited to a single outbreak farm in Indiana during 2016.

作者信息

Lee Dong-Hun, Torchetti Mia Kim, Killian Mary Lea, Swayne David E

机构信息

Southeast Poultry Research Laboratory, U.S. National Poultry Research Center, Agricultural Research Service, U.S. Department of Agriculture, Athens, GA, USA.

National Veterinary Services Laboratories, Science, Technology and Analysis Services, Veterinary Services, Animal and Plant Health Inspection Service, U.S. Department of Agriculture, Ames, IA, USA.

出版信息

Virology. 2017 Jul;507:216-219. doi: 10.1016/j.virol.2017.04.025. Epub 2017 Apr 26.

Abstract

In mid-January 2016, an outbreak of H7N8 high-pathogenicity avian influenza virus (HPAIV) in commercial turkeys occurred in Indiana. Surveillance within the 10km control zone identified H7N8 low-pathogenicity avian influenza virus (LPAIV) in nine surrounding turkey flocks but no other HPAIV-affected premises. We sequenced four of the H7N8 HPAIV isolated from the single farm and nine LPAIV identified during control zone surveillance. Evaluation included phylogenetic network analysis indicating close relatedness across the HPAIV and LPAIV, and that the progenitor H7N8 LPAIV spread among the affected turkey farms in Indiana, followed by spontaneous mutation to HPAIV on a single premise through acquisition of three basic amino acids at the hemagglutinin cleavage site. Deep sequencing of the available viruses failed to identify subpopulations in either the HPAIV or LPAIV suggesting mutation to HPAIV likely occurred on a single farm and the HPAIV did not spread to epidemiologically linked LPAIV-affected farms.

摘要

2016年1月中旬,印第安纳州的商业养殖火鸡中爆发了H7N8高致病性禽流感病毒(HPAIV)疫情。在10公里控制区内的监测发现,周边9个火鸡群中存在H7N8低致病性禽流感病毒(LPAIV),但没有其他受HPAIV影响的养殖场。我们对从单个养殖场分离出的4株H7N8 HPAIV以及在控制区监测期间鉴定出的9株LPAIV进行了测序。评估包括系统发育网络分析,结果表明HPAIV和LPAIV之间密切相关,且始祖H7N8 LPAIV在印第安纳州受影响的火鸡养殖场中传播,随后在单个养殖场通过在血凝素裂解位点获得三个碱性氨基酸自发突变为HPAIV。对现有病毒的深度测序未能在HPAIV或LPAIV中鉴定出亚群,这表明向HPAIV的突变可能发生在单个养殖场,且HPAIV未传播到与流行病学相关的受LPAIV影响的养殖场。

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