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一种基于成分的预处理方法,用于通过近红外吸收测量对软骨进行表征。

A constituent-based preprocessing approach for characterising cartilage using NIR absorbance measurements.

作者信息

Brown Cameron P, Chen Minsi

机构信息

Botnar Research Centre, NDORMS, University of Oxford, Old Road, Oxford OX3 7LD, UK.

Department of Computing and Mathematics, University of Derby, Kedleston Road, Derby DE22 1GB, UK.

出版信息

Biomed Phys Eng Express. 2016 Feb;2(1):017002. doi: 10.1088/2057-1976/2/1/017002. Epub 2016 Jan 18.

Abstract

Near-infrared spectroscopy is a widely adopted technique for characterising biological tissues. The high dimensionality of spectral data, however, presents a major challenge for analysis. Here, we present a second-derivative Beer's law-based technique aimed at projecting spectral data onto a lower dimension feature space characterised by the constituents of the target tissue type. This is intended as a preprocessing step to provide a physically-based, low dimensionality input to predictive models. Testing the proposed technique on an experimental set of 145 bovine cartilage samples before and after enzymatic degradation, produced a clear visual separation between the normal and degraded groups. Reduced proteoglycan and collagen concentrations, and increased water concentrations were predicted by simple linear fitting following degradation (all [Formula: see text]). Classification accuracy using the Mahalanobis distance was [Formula: see text] between these groups.

摘要

近红外光谱法是一种广泛应用于生物组织表征的技术。然而,光谱数据的高维性给分析带来了重大挑战。在此,我们提出了一种基于二阶导数比尔定律的技术,旨在将光谱数据投影到一个由目标组织类型的成分所表征的低维特征空间。这旨在作为一个预处理步骤,为预测模型提供基于物理的低维输入。在一组145个牛软骨样本的酶解前后实验集上测试所提出的技术,正常组和降解组之间产生了明显的视觉分离。降解后通过简单线性拟合预测蛋白聚糖和胶原蛋白浓度降低,水分浓度增加(所有[公式:见原文])。使用马氏距离的分类准确率在这些组之间为[公式:见原文]。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/715a/5390781/5c0277d8aca6/bpexaa0caff1.jpg

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