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噬菌体phiKZ的内切溶菌转糖基酶gp144中的双活性位点

Dual Active Site in the Endolytic Transglycosylase gp144 of Bacteriophage phiKZ.

作者信息

Chertkov O V, Armeev G A, Uporov I V, Legotsky S A, Sykilinda N N, Shaytan A K, Klyachko N L, Miroshnikov K A

机构信息

Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry, Mikluho-Maklaya str. 16/10, Moscow, 117997, Russia.

Lomonosov Moscow State University, Biology department, Leninskie Gory 1, bld. 12, Moscow, 119991 , Russia.

出版信息

Acta Naturae. 2017 Jan-Mar;9(1):81-87.

Abstract

Lytic transglycosylases are abundant peptidoglycan lysing enzymes that degrade the heteropolymers of bacterial cell walls in metabolic processes or in the course of a bacteriophage infection. The conventional catalytic mechanism of transglycosylases involves only the Glu or Asp residue. Endolysin gp144 of bacteriophage phiKZ belongs to the family of Gram-negative transglycosylases with a modular composition and -terminal location of the catalytic domain. Glu115 of gp144 performs the predicted role of a catalytic residue. However, replacement of this residue does not completely eliminate the activity of the mutant protein. Site-directed mutagenesis has revealed the participation of Tyr197 in the catalytic mechanism, as well as the presence of a second active site involving Glu178 and Tyr147. The existence of the dual active site was supported by computer modeling and monitoring of the molecular dynamics of the changes in the conformation and surface charge distribution as a consequence of point mutations.

摘要

溶菌转糖基酶是丰富的肽聚糖裂解酶,可在代谢过程或噬菌体感染过程中降解细菌细胞壁的杂聚物。转糖基酶的传统催化机制仅涉及Glu或Asp残基。噬菌体phiKZ的内溶素gp144属于革兰氏阴性转糖基酶家族,具有模块化组成且催化结构域位于N端。gp144的Glu115发挥催化残基的预期作用。然而,该残基的替换并未完全消除突变蛋白的活性。定点诱变揭示了Tyr197参与催化机制,以及存在涉及Glu178和Tyr147的第二个活性位点。双活性位点的存在得到了计算机建模以及对因点突变导致的构象和表面电荷分布变化的分子动力学监测的支持。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/33df/5406664/8917829da2d7/AN20758251-09-01-081-g001.jpg

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