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通过含时密度泛函理论对5-苄基尿嘧啶光化学性质的表征

Characterization of the Photochemical Properties of 5-Benzyluracil via Time-Dependent Density Functional Theory.

作者信息

Micciarelli M, Curchod B F E, Bonella S, Altucci C, Valadan M, Rothlisberger U, Tavernelli I

机构信息

Department of Physics, University of Rome "La Sapienza" , Ple A. Moro 5, 00185 Rome, Italy.

Department of Physics, University of Naples "Federico II" , Via Cintia, 26-80126 Napoli, Italy.

出版信息

J Phys Chem A. 2017 May 25;121(20):3909-3917. doi: 10.1021/acs.jpca.6b12799. Epub 2017 May 16.

Abstract

We present a detailed study of the excited state properties of 5-benzyluracil (5BU) in the gas phase and in implicit solvent using different electronic structure approaches ranging from time-dependent density functional theory in the linear response regime (LR-TDDFT) to a set of different wave-function-based methods for excited states, namely perturbed coupled cluster (CC2), algebraic diagrammatic construction method to second order (ADC(2)), and perturbed configuration interaction (CIS(D)). 5BU has been used to investigate DNA base-amino acid interactions. In particular, it served as a model of protein-DNA photoinduced cross-linking. While LR-TDDFT is computationally the most efficient first-principles approach for static and dynamic simulations of this bichromophoric system, its accuracy is difficult to assess due to the presence of excited states with charge transfer character. In this work, the performance of different exchange correlation functionals is compared against accurate benchmarks obtained either from high level wave-function-based methods or directly from experimental absorption spectra. Our investigation shows that accurate results for the excitation energies can be obtained using the hybrid meta-GGA functional M06. In view of dynamical studies of the relaxation of 5BU after photoexcitation, we also show that the PBE functional, while failing in the Franck-Condon region, provides qualitatively good results for the characterisation of a possible photocyclization path.

摘要

我们使用不同的电子结构方法,从线性响应区域的含时密度泛函理论(LR-TDDFT)到一组用于激发态的基于波函数的不同方法,即微扰耦合簇(CC2)、二阶代数图示构建方法(ADC(2))和微扰组态相互作用(CIS(D)),对气相和隐式溶剂中5-苄基尿嘧啶(5BU)的激发态性质进行了详细研究。5BU已被用于研究DNA碱基与氨基酸的相互作用。特别是,它作为蛋白质-DNA光诱导交联的模型。虽然LR-TDDFT在计算上是对该双色体系进行静态和动态模拟最有效的第一性原理方法,但由于存在具有电荷转移特征的激发态,其准确性难以评估。在这项工作中,将不同交换相关泛函的性能与从基于高水平波函数的方法或直接从实验吸收光谱获得的精确基准进行了比较。我们的研究表明,使用混合元广义梯度近似泛函M06可以获得激发能的准确结果。鉴于对5BU光激发后弛豫的动力学研究,我们还表明,PBE泛函虽然在弗兰克-康登区域失效,但对于表征可能的光环化路径提供了定性良好的结果。

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