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An evolutionary case for functional gene body methylation in plants and animals.植物和动物中功能基因体甲基化的进化实例。
Genome Biol. 2017 May 9;18(1):87. doi: 10.1186/s13059-017-1230-2.
2
Gene body DNA methylation in plants.植物中的基因体DNA甲基化
Curr Opin Plant Biol. 2017 Apr;36:103-110. doi: 10.1016/j.pbi.2016.12.007. Epub 2017 Mar 1.
3
Tracing the origin and evolution history of methylation-related genes in plants.追踪植物中与甲基化相关的基因的起源和进化历史。
BMC Plant Biol. 2019 Jul 12;19(1):307. doi: 10.1186/s12870-019-1923-7.
4
Gene body methylation is conserved between plant orthologs and is of evolutionary consequence.基因体甲基化在植物直系同源物之间是保守的，并且具有进化意义。
Proc Natl Acad Sci U S A. 2013 Jan 29;110(5):1797-802. doi: 10.1073/pnas.1215380110. Epub 2013 Jan 14.
5
Intertwined evolution of plant epigenomes and genomes.植物表观基因组和基因组的交织进化。
Curr Opin Plant Biol. 2021 Jun;61:101990. doi: 10.1016/j.pbi.2020.101990. Epub 2021 Jan 11.
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Cross-species analysis of genic GC3 content and DNA methylation patterns.种间基因 GC3 含量和 DNA 甲基化模式的分析。
Genome Biol Evol. 2013;5(8):1443-56. doi: 10.1093/gbe/evt103.
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Divergence of gene body DNA methylation and evolution of plant duplicate genes.基因体DNA甲基化的分歧与植物重复基因的进化
PLoS One. 2014 Oct 13;9(10):e110357. doi: 10.1371/journal.pone.0110357. eCollection 2014.
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Genome-wide evolutionary analysis of eukaryotic DNA methylation.真核生物 DNA 甲基化的全基因组进化分析。
Science. 2010 May 14;328(5980):916-9. doi: 10.1126/science.1186366. Epub 2010 Apr 15.
9
Conservation and divergence of methylation patterning in plants and animals.动植物中甲基化模式的保守性与分化。
Proc Natl Acad Sci U S A. 2010 May 11;107(19):8689-94. doi: 10.1073/pnas.1002720107. Epub 2010 Apr 15.
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Divergent DNA methylation contributes to duplicated gene evolution and chilling response in tea plants.差异的 DNA 甲基化导致茶树中重复基因的进化和冷胁迫响应。
Plant J. 2021 Jun;106(5):1312-1327. doi: 10.1111/tpj.15237. Epub 2021 Apr 16.
引用本文的文献
1
Characterization of DNA methylation reader proteins in .……中DNA甲基化阅读蛋白的表征
Genome Res. 2024 Dec 23;34(12):2229-2243. doi: 10.1101/gr.279379.124.
2
Genome-wide DNA methylation and their transgenerational pattern differ in Arabidopsis thaliana populations originated along the elevation of West Himalaya.源自西喜马拉雅山脉海拔梯度上的拟南芥种群的全基因组 DNA 甲基化及其跨代模式存在差异。
BMC Plant Biol. 2024 Oct 9;24(1):936. doi: 10.1186/s12870-024-05641-0.
3
The Genome Architecture of the Copepod Eurytemora carolleeae - the Highly Invasive Atlantic Clade of the Eurytemoraaffinis Species Complex.桡足类卡罗莱伊宽水蚤的基因组结构——亲缘宽水蚤物种复合体中极具入侵性的大西洋分支
Genomics Proteomics Bioinformatics. 2024 Dec 3;22(5). doi: 10.1093/gpbjnl/qzae066.
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Epigenetics Research in Evolutionary Biology: Perspectives on Timescales and Mechanisms.进化生物学中的表观遗传学研究：对时间尺度和机制的思考。
Mol Biol Evol. 2024 Sep 3;41(9). doi: 10.1093/molbev/msae170.
5
Selection on genome-wide gene expression plasticity of rice in wet and dry field environments.对水稻在水田和旱田环境下全基因组基因表达可塑性的选择。
Mol Ecol. 2024 Aug 30:e17522. doi: 10.1111/mec.17522.
6
DNA methylation in mammalian development and disease.哺乳动物发育与疾病中的DNA甲基化
Nat Rev Genet. 2025 Jan;26(1):7-30. doi: 10.1038/s41576-024-00760-8. Epub 2024 Aug 12.
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Multilayered epigenetic control of persistent and stage-specific imprinted genes in rice endosperm.水稻胚乳中持久的和阶段特异性印记基因的多层次表观遗传控制。
Nat Plants. 2024 Aug;10(8):1231-1245. doi: 10.1038/s41477-024-01754-4. Epub 2024 Jul 30.
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Stress-induced epigenetic effects driven by maternal lactation in dairy cattle: a comethylation network approach.应激诱导的奶牛母性哺乳引起的表观遗传效应：共甲基化网络方法。
Epigenetics. 2024 Dec;19(1):2381856. doi: 10.1080/15592294.2024.2381856. Epub 2024 Jul 23.
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DNA methylation enables recurrent endogenization of giant viruses in an animal relative.DNA 甲基化使巨型病毒在动物亲缘中反复内源性化。
Sci Adv. 2024 Jul 12;10(28):eado6406. doi: 10.1126/sciadv.ado6406.
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Regulatory and evolutionary impact of DNA methylation in two songbird species and their naturally occurring F hybrids.DNA 甲基化在两种鸣禽及其自然发生的 F 杂种中的调控和进化影响。
BMC Biol. 2024 May 29;22(1):124. doi: 10.1186/s12915-024-01920-2.
本文引用的文献
1
Gene body DNA methylation in plants.植物中的基因体DNA甲基化
Curr Opin Plant Biol. 2017 Apr;36:103-110. doi: 10.1016/j.pbi.2016.12.007. Epub 2017 Mar 1.
2
On the origin and evolutionary consequences of gene body DNA methylation.关于基因体DNA甲基化的起源及进化后果
Proc Natl Acad Sci U S A. 2016 Aug 9;113(32):9111-6. doi: 10.1073/pnas.1604666113. Epub 2016 Jul 25.
3
Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions.拟南芥全球种质资源库中的表观基因组多样性
Cell. 2016 Jul 14;166(2):492-505. doi: 10.1016/j.cell.2016.06.044.
4
Evolutionary patterns of genic DNA methylation vary across land plants.基因 DNA 甲基化在陆地植物中的进化模式存在差异。
Nat Plants. 2016 Jan 25;2:15222. doi: 10.1038/nplants.2015.222.
5
Evolution by gene loss.基因缺失导致的进化。
Nat Rev Genet. 2016 Jul;17(7):379-91. doi: 10.1038/nrg.2016.39. Epub 2016 Apr 18.
6
Evolution and function of genomic imprinting in plants.植物基因组印记的进化与功能
Genes Dev. 2015 Dec 15;29(24):2517-31. doi: 10.1101/gad.269902.115.
7
DNA methylation as a system of plant genomic immunity.DNA 甲基化作为植物基因组免疫的一种系统。
Trends Plant Sci. 2014 May;19(5):320-6. doi: 10.1016/j.tplants.2014.01.014. Epub 2014 Mar 4.
8
Signatures of mutational processes in human cancer.人类癌症中的突变过程特征。
Nature. 2013 Aug 22;500(7463):415-21. doi: 10.1038/nature12477. Epub 2013 Aug 14.
9
Patterning and regulatory associations of DNA methylation are mirrored by histone modifications in insects.在昆虫中，DNA 甲基化的模式和调控关联被组蛋白修饰所反映。
Genome Biol Evol. 2013;5(3):591-8. doi: 10.1093/gbe/evt030.
10
Gene body methylation is conserved between plant orthologs and is of evolutionary consequence.基因体甲基化在植物直系同源物之间是保守的，并且具有进化意义。
Proc Natl Acad Sci U S A. 2013 Jan 29;110(5):1797-802. doi: 10.1073/pnas.1215380110. Epub 2013 Jan 14.
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