• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

转录会引起大肠杆菌中DNA模板的旋转。

Transcription induces gyration of the DNA template in Escherichia coli.

作者信息

Figueroa N, Bossi L

机构信息

Sclavo Research Center, Siena, Italy.

出版信息

Proc Natl Acad Sci U S A. 1988 Dec;85(24):9416-20. doi: 10.1073/pnas.85.24.9416.

DOI:10.1073/pnas.85.24.9416
PMID:2849103
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC282763/
Abstract

We show that transcription modulation of a plasmid sequence in exponentially growing Escherichia coli cells leads to a rapid change in the linking number of plasmid DNA. Activation of transcription is accompanied by an increase in the plasmid's level of negative supercoiling. The added superhelical turns, whose number is proportional to the strength of the promoter and to the length of the transcript, are promptly removed when transcription is turned off. The transcription-induced increase of template supercoiling can still be detected in the presence of an inhibitor of ATP-dependent DNA gyrase [DNA topoisomerase (ATP-hydrolyzing), EC 5.99.1.3]. Altogether, our results indicate that, in addition to being under a general control, DNA superhelicity can be modulated locally in response to the topological perturbations associated with DNA tracking processes. We discuss a model in which supercoiling changes are produced by differential swiveling activities on the opposite sides of a transcriptional flow during transcriptional modulation.

摘要

我们表明,在指数生长的大肠杆菌细胞中,质粒序列的转录调控会导致质粒DNA连接数的快速变化。转录激活伴随着质粒负超螺旋水平的增加。当转录关闭时,额外的超螺旋圈(其数量与启动子强度和转录本长度成正比)会迅速消除。在存在ATP依赖性DNA促旋酶[DNA拓扑异构酶(ATP水解),EC 5.99.1.3]抑制剂的情况下,仍可检测到转录诱导的模板超螺旋增加。总之,我们的结果表明,除了受到一般控制外,DNA超螺旋度还可以响应与DNA追踪过程相关的拓扑扰动而进行局部调节。我们讨论了一个模型,其中超螺旋变化是由转录调控期间转录流两侧的差异旋转活性产生的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cc78/282763/44f94f9f7372/pnas00303-0055-c.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cc78/282763/d67318b8edba/pnas00303-0054-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cc78/282763/510f0a185fd4/pnas00303-0054-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cc78/282763/68cbf5d6cf33/pnas00303-0054-c.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cc78/282763/192d12bc6459/pnas00303-0055-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cc78/282763/029c8185b87e/pnas00303-0055-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cc78/282763/44f94f9f7372/pnas00303-0055-c.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cc78/282763/d67318b8edba/pnas00303-0054-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cc78/282763/510f0a185fd4/pnas00303-0054-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cc78/282763/68cbf5d6cf33/pnas00303-0054-c.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cc78/282763/192d12bc6459/pnas00303-0055-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cc78/282763/029c8185b87e/pnas00303-0055-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cc78/282763/44f94f9f7372/pnas00303-0055-c.jpg

相似文献

1
Transcription induces gyration of the DNA template in Escherichia coli.转录会引起大肠杆菌中DNA模板的旋转。
Proc Natl Acad Sci U S A. 1988 Dec;85(24):9416-20. doi: 10.1073/pnas.85.24.9416.
2
Hypernegative supercoiling of the DNA template during transcription elongation in vitro.体外转录延伸过程中DNA模板的超负超螺旋化。
J Biol Chem. 1994 Jan 21;269(3):2068-74.
3
Transcription generates positively and negatively supercoiled domains in the template.转录在模板中产生正超螺旋结构域和负超螺旋结构域。
Cell. 1988 May 6;53(3):433-40. doi: 10.1016/0092-8674(88)90163-8.
4
[DNA supercoiling and topoisomerases in Escherichia coli].[大肠杆菌中的DNA超螺旋与拓扑异构酶]
Rev Latinoam Microbiol. 1995 Jul-Sep;37(3):291-304.
5
In vivo correlation between DNA supercoiling and transcription.DNA超螺旋与转录之间的体内相关性。
Gene. 1981 Mar;13(2):173-84. doi: 10.1016/0378-1119(81)90006-8.
6
DNA supercoiling in vivo.体内DNA超螺旋
Biophys Chem. 1988 Feb;29(1-2):7-15. doi: 10.1016/0301-4622(88)87020-0.
7
Influence of the linking number of template DNA on sigma 32-dependent transcription initiation in vitro of the Escherichia coli groE gene.模板DNA的连环数对大肠杆菌groE基因体外σ32依赖型转录起始的影响。
Biol Pharm Bull. 1996 Jul;19(7):922-31. doi: 10.1248/bpb.19.922.
8
Dynamics of DNA supercoiling by transcription in Escherichia coli.大肠杆菌中转录引起的DNA超螺旋动力学
Proc Natl Acad Sci U S A. 1992 Nov 15;89(22):10603-7. doi: 10.1073/pnas.89.22.10603.
9
Plasmid DNA supercoiling by DNA gyrase.DNA 回旋酶介导的质粒 DNA 超螺旋化
Methods Mol Biol. 2001;95:25-33. doi: 10.1385/1-59259-057-8:25.
10
Extensive regulation compromises the extent to which DNA gyrase controls DNA supercoiling and growth rate of Escherichia coli.广泛的调控会影响DNA旋转酶控制大肠杆菌DNA超螺旋和生长速率的程度。
Eur J Biochem. 1999 Dec;266(3):865-77. doi: 10.1046/j.1432-1327.1999.00921.x.

引用本文的文献

1
RNase HI Depletion Strongly Potentiates Cell Killing by Rifampicin in Mycobacteria.核糖核酸酶 HI 耗竭强烈增强利福平对分枝杆菌的细胞杀伤作用。
Antimicrob Agents Chemother. 2022 Oct 18;66(10):e0209121. doi: 10.1128/aac.02091-21. Epub 2022 Sep 26.
2
argC Orthologs from Rhizobiales show diverse profiles of transcriptional efficiency and functionality in Sinorhizobium meliloti.根瘤菌目 ArgC 直系同源物在苜蓿中华根瘤菌中表现出不同的转录效率和功能特性。
J Bacteriol. 2011 Jan;193(2):460-72. doi: 10.1128/JB.01010-10. Epub 2010 Nov 12.
3
mwr Xer site-specific recombination is hypersensitive to DNA supercoiling.

本文引用的文献

1
Regulation of bacterial DNA supercoiling: plasmid linking numbers vary with growth temperature.细菌DNA超螺旋的调控:质粒连环数随生长温度而变化。
Proc Natl Acad Sci U S A. 1984 Jul;81(13):4046-50. doi: 10.1073/pnas.81.13.4046.
2
The hisR locus of Salmonella: nucleotide sequence and expression.沙门氏菌的hisR基因座:核苷酸序列与表达
Mol Gen Genet. 1983;192(1-2):163-70. doi: 10.1007/BF00327662.
3
The tac promoter: a functional hybrid derived from the trp and lac promoters.Tac启动子:一种源自色氨酸启动子和乳糖启动子的功能性杂种启动子。
Mwr Xer位点特异性重组对DNA超螺旋高度敏感。
Nucleic Acids Res. 2009 Jun;37(11):3580-7. doi: 10.1093/nar/gkp208. Epub 2009 Apr 9.
4
Mutation at the "exit gate" of the salmonella gyrase a subunit suppresses a defect in the gyrase B subunit.沙门氏菌gyrase A亚基“出口门”处的突变抑制了gyrase B亚基的缺陷。
J Bacteriol. 2005 Oct;187(19):6841-4. doi: 10.1128/JB.187.19.6841-6844.2005.
5
Transcription-induced barriers to supercoil diffusion in the Salmonella typhimurium chromosome.转录对鼠伤寒沙门氏菌染色体中超螺旋扩散的诱导障碍。
Proc Natl Acad Sci U S A. 2004 Mar 9;101(10):3398-403. doi: 10.1073/pnas.0307550101. Epub 2004 Mar 1.
6
Potent stimulation of transcription-coupled DNA supercoiling by sequence-specific DNA-binding proteins.序列特异性DNA结合蛋白对转录偶联DNA超螺旋的强力刺激作用。
Proc Natl Acad Sci U S A. 2002 Jul 9;99(14):9139-44. doi: 10.1073/pnas.142002099. Epub 2002 Jul 1.
7
A biochemical mechanism for nonrandom mutations and evolution.一种非随机突变与进化的生化机制。
J Bacteriol. 2000 Jun;182(11):2993-3001. doi: 10.1128/JB.182.11.2993-3001.2000.
8
Influence of highly curved DNA segments on in vivo topology of plasmids.高度弯曲的DNA片段对质粒体内拓扑结构的影响。
Mol Biol Rep. 1999 Dec;26(4):269-76. doi: 10.1023/a:1007017121313.
9
The supercoiling sensitivity of a bacterial tRNA promoter parallels its responsiveness to stringent control.细菌tRNA启动子的超螺旋敏感性与其对严格控制的反应性相似。
EMBO J. 1998 Apr 15;17(8):2359-67. doi: 10.1093/emboj/17.8.2359.
10
A particular DNA structure is required for the function of a cis-acting component of the Epstein-Barr virus OriLyt origin of replication.爱泼斯坦-巴尔病毒OriLyt复制起点的顺式作用元件的功能需要特定的DNA结构。
Nucleic Acids Res. 1997 Apr 1;25(7):1347-54. doi: 10.1093/nar/25.7.1347.
Proc Natl Acad Sci U S A. 1983 Jan;80(1):21-5. doi: 10.1073/pnas.80.1.21.
4
Plasmid vectors for the selection of promoters.用于启动子选择的质粒载体。
Gene. 1984 Feb;27(2):151-60. doi: 10.1016/0378-1119(84)90136-7.
5
Regulation of the genes for E. coli DNA gyrase: homeostatic control of DNA supercoiling.大肠杆菌DNA促旋酶基因的调控:DNA超螺旋的稳态控制
Cell. 1983 Aug;34(1):105-13. doi: 10.1016/0092-8674(83)90140-x.
6
Positively supercoiled plasmid DNA is produced by treatment of Escherichia coli with DNA gyrase inhibitors.通过用DNA回旋酶抑制剂处理大肠杆菌可产生正超螺旋质粒DNA。
Nucleic Acids Res. 1983 May 25;11(10):2999-3017. doi: 10.1093/nar/11.10.2999.
7
Escherichia coli DNA topoisomerase I mutants have compensatory mutations in DNA gyrase genes.大肠杆菌DNA拓扑异构酶I突变体在DNA促旋酶基因中存在补偿性突变。
Cell. 1982 Nov;31(1):43-51. doi: 10.1016/0092-8674(82)90403-2.
8
Escherichia coli DNA topoisomerase I mutants: increased supercoiling is corrected by mutations near gyrase genes.大肠杆菌DNA拓扑异构酶I突变体:超螺旋增加可通过gyrase基因附近的突变得到纠正。
Cell. 1982 Nov;31(1):35-42. doi: 10.1016/0092-8674(82)90402-0.
9
A topological model for transcription based on unwinding angle analysis of E. coli RNA polymerase binary, initiation and ternary complexes.基于大肠杆菌RNA聚合酶二元、起始和三元复合物解旋角度分析的转录拓扑模型。
Cell. 1982 May;29(1):81-90. doi: 10.1016/0092-8674(82)90092-7.
10
Torsional tension in the DNA double helix measured with trimethylpsoralen in living E. coli cells: analogous measurements in insect and human cells.利用三甲基补骨脂素在活的大肠杆菌细胞中测量DNA双螺旋的扭转张力:在昆虫和人类细胞中的类似测量
Cell. 1980 Oct;21(3):773-83. doi: 10.1016/0092-8674(80)90440-7.