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从头算分子动力学模拟揭示质子化调节的组氨酸水溶液中过剩电子的定位:阴离子中心与阳离子中心定位。

Protonation-modulated localization of excess electrons in histidine aqueous solutions revealed by ab initio molecular dynamics simulations: anion-centered versus cation-centered localization.

机构信息

School of Chemistry and Chemical Engineering, Shandong University, Jinan, 250100, P. R. China.

出版信息

Phys Chem Chem Phys. 2017 May 31;19(21):13807-13818. doi: 10.1039/c7cp01847a.

Abstract

In this work, we present an ab initio molecular dynamics simulation study on the interaction of an excess electron (EE) with histidine in its aqueous solution. Two different configurations of histidine (imidazole group protonated or not) are considered to reflect its different existing forms in neutral or slightly acidic surroundings. The simulation results indicate that localizations of EEs in different aqueous histidine solutions are quite different and are strongly affected by protonation of the side chain imidazole group and are thus pH-controlled. In neutral aqueous histidine solution, an EE localizes onto the carboxyl anionic group of the amino acid backbone after a relatively lengthy diffuse state, performing just like in an aliphatic amino acid solution. But in weakly acidic solution in which the side chain imidazole group is protonated, an EE undergoes a short lifetime diffuse state and finally localizes on the protonated imidazole group. We carefully examine these two different localization dynamics processes and analyze the competition between different dominating groups in their corresponding electron localization mechanisms. To explain the difference, we investigate the frontier molecular orbitals of these two systems and find that their energy levels and compositions are important to determine these differences. These findings can provide helpful information to understand the interaction mechanisms of low energy EEs with amino acids and even oligopeptides, especially with aromatic rings.

摘要

在这项工作中,我们进行了从头分子动力学模拟研究,以探索过量电子(EE)与组氨酸在其水溶液中的相互作用。考虑了组氨酸的两种不同构型(咪唑基质子化或非质子化),以反映其在中性或略酸性环境中的不同存在形式。模拟结果表明,EE 在不同的水溶液中定位方式有很大的不同,强烈受到侧链咪唑基质子化的影响,因此是 pH 值控制的。在中性水溶液中,EE 在经历相对较长的扩散状态后,定位在氨基酸主链的羧基阴离子上,就像在脂肪族氨基酸溶液中一样。但是,在侧链咪唑基质子化的弱酸性溶液中,EE 经历了短暂的扩散状态,最终定位在质子化的咪唑基上。我们仔细研究了这两种不同的定位动力学过程,并分析了它们在相应的电子定位机制中不同主导基团之间的竞争。为了解释这种差异,我们研究了这两个系统的前沿分子轨道,发现它们的能级和组成对确定这些差异很重要。这些发现可以为理解低能 EE 与氨基酸甚至寡肽(尤其是芳环)的相互作用机制提供有价值的信息。

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