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PWWP domains and their modes of sensing DNA and histone methylated lysines.PWWP结构域及其识别DNA和组蛋白甲基化赖氨酸的模式。
Biophys Rev. 2016 Mar;8(1):63-74. doi: 10.1007/s12551-015-0190-6. Epub 2016 Jan 14.
2
Solution structure of the Pdp1 PWWP domain reveals its unique binding sites for methylated H4K20 and DNA.Pdp1 PWWP 结构域的溶液结构揭示了其对甲基化 H4K20 和 DNA 的独特结合位点。
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3
Structural and histone binding ability characterizations of human PWWP domains.人 PWWP 结构域的结构和组蛋白结合能力分析。
PLoS One. 2011;6(6):e18919. doi: 10.1371/journal.pone.0018919. Epub 2011 Jun 20.
4
Structure and function of the nucleosome-binding PWWP domain.核小体结合 PWWP 结构域的结构与功能。
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5
Solution structure of TbTFIIS2-2 PWWP domain from and its binding to H4K17me3 and H3K32me3.来自(此处原文缺失具体来源信息)的TbTFIIS2-2 PWWP结构域的溶液结构及其与H4K17me3和H3K32me3的结合
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Crystal structure of the BRPF2 PWWP domain in complex with DNA reveals a different binding mode than the HDGF family of PWWP domains.BRPF2 PWWP 结构域与 DNA 复合物的晶体结构揭示了与 HDGF 家族 PWWP 结构域不同的结合模式。
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Structural basis for recognition of histone H3K36me3 nucleosome by human de novo DNA methyltransferases 3A and 3B.人类从头DNA甲基转移酶3A和3B识别组蛋白H3K36me3核小体的结构基础
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H3K36me2/3 Binding and DNA Binding of the DNA Methyltransferase DNMT3A PWWP Domain Both Contribute to its Chromatin Interaction.H3K36me2/3 结合和 DNA 结合的 DNA 甲基转移酶 DNMT3A PWWP 结构域均有助于其染色质相互作用。
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Biochim Biophys Acta. 2014 Dec;1839(12):1433-9. doi: 10.1016/j.bbagrm.2014.03.009. Epub 2014 Mar 28.

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Lysine Acetyltransferase 6 Complexes in Neurodevelopmental Disorders and Different Types of Cancer.神经发育障碍和不同类型癌症中的赖氨酸乙酰转移酶6复合物
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Structural basis of thymidine-rich DNA recognition by Drosophila P75 PWWP domain.果蝇P75 PWWP结构域识别富含胸苷DNA的结构基础。
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PWWP domain-containing protein Crf4-3 specifically modulates fungal azole susceptibility by regulating sterol C-14 demethylase ERG11.含PWWP结构域的蛋白Crf4-3通过调节甾醇C-14脱甲基酶ERG11特异性地调控真菌对唑类药物的敏感性。
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The PWWP domain and the evolution of unique DNA methylation toolkits in Hymenoptera.膜翅目昆虫中PWWP结构域与独特DNA甲基化工具包的进化
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6
Multivalency of nucleosome recognition by LEDGF.LEDGF对核小体识别的多价性
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8
Chemical tools targeting readers of lysine methylation.靶向赖氨酸甲基化读者的化学工具。
Curr Opin Chem Biol. 2023 Jun;74:102286. doi: 10.1016/j.cbpa.2023.102286. Epub 2023 Mar 20.
9
Gene fusions, micro-exons and splice variants define stress signaling by AP2/ERF and WRKY transcription factors in the sesame pan-genome.基因融合、微外显子和剪接变体定义了芝麻泛基因组中AP2/ERF和WRKY转录因子的胁迫信号传导。
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10
DNA Methylation in Honey Bees and the Unresolved Questions in Insect Methylomics.蜜蜂中的DNA甲基化及昆虫甲基组学中未解决的问题。
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本文引用的文献

1
The First Residue of the PWWP Motif Modulates HATH Domain Binding, Stability, and Protein-Protein Interaction.PWWP基序的首个残基调控HATH结构域结合、稳定性及蛋白质-蛋白质相互作用。
Biochemistry. 2015 Jul 7;54(26):4063-74. doi: 10.1021/acs.biochem.5b00454. Epub 2015 Jun 24.
2
Structure and function of the nucleosome-binding PWWP domain.核小体结合 PWWP 结构域的结构与功能。
Trends Biochem Sci. 2014 Nov;39(11):536-47. doi: 10.1016/j.tibs.2014.09.001. Epub 2014 Sep 29.
3
BS69/ZMYND11 reads and connects histone H3.3 lysine 36 trimethylation-decorated chromatin to regulated pre-mRNA processing.BS69/ZMYND11 读取并连接组蛋白 H3.3 赖氨酸 36 三甲基化修饰的染色质与受调控的前体 mRNA 加工。
Mol Cell. 2014 Oct 23;56(2):298-310. doi: 10.1016/j.molcel.2014.08.022. Epub 2014 Sep 25.
4
A PWWP domain-containing protein targets the NuA3 acetyltransferase complex via histone H3 lysine 36 trimethylation to coordinate transcriptional elongation at coding regions.一种含PWWP结构域的蛋白质通过组蛋白H3赖氨酸36三甲基化靶向NuA3乙酰转移酶复合物,以协调编码区的转录延伸。
Mol Cell Proteomics. 2014 Nov;13(11):2883-95. doi: 10.1074/mcp.M114.038224. Epub 2014 Aug 6.
5
Physicochemical modifications of histones and their impact on epigenomics.组蛋白的理化修饰及其对表观基因组学的影响。
Drug Discov Today. 2014 Sep;19(9):1372-9. doi: 10.1016/j.drudis.2014.05.005. Epub 2014 May 20.
6
Crystal structure of human BS69 Bromo-ZnF-PWWP reveals its role in H3K36me3 nucleosome binding.人源 BS69 溴化锌指 - PWWP 的晶体结构揭示了其在 H3K36me3 核小体结合中的作用。
Cell Res. 2014 Jul;24(7):890-3. doi: 10.1038/cr.2014.38. Epub 2014 Mar 28.
7
Hitting the 'mark': interpreting lysine methylation in the context of active transcription.命中“目标”:在活跃转录背景下解读赖氨酸甲基化
Biochim Biophys Acta. 2014 Dec;1839(12):1353-61. doi: 10.1016/j.bbagrm.2014.03.002. Epub 2014 Mar 12.
8
Interpreting the language of histone and DNA modifications.解读组蛋白和DNA修饰的语言。
Biochim Biophys Acta. 2014 Aug;1839(8):627-43. doi: 10.1016/j.bbagrm.2014.03.001. Epub 2014 Mar 12.
9
ZMYND11 links histone H3.3K36me3 to transcription elongation and tumour suppression.ZMYND11 将组蛋白 H3.3K36me3 与转录延伸和肿瘤抑制联系起来。
Nature. 2014 Apr 10;508(7495):263-8. doi: 10.1038/nature13045. Epub 2014 Mar 2.
10
Readers of histone methylarginine marks.组蛋白甲基精氨酸标记的读者。
Biochim Biophys Acta. 2014 Aug;1839(8):702-10. doi: 10.1016/j.bbagrm.2014.02.015. Epub 2014 Feb 28.

PWWP结构域及其识别DNA和组蛋白甲基化赖氨酸的模式。

PWWP domains and their modes of sensing DNA and histone methylated lysines.

作者信息

Rona Germana B, Eleutherio Elis C A, Pinheiro Anderson S

机构信息

Department of Biochemistry, Institute of Chemistry, Federal University of Rio de Janeiro, Rio de Janeiro, 21941-909, Brazil.

出版信息

Biophys Rev. 2016 Mar;8(1):63-74. doi: 10.1007/s12551-015-0190-6. Epub 2016 Jan 14.

DOI:10.1007/s12551-015-0190-6
PMID:28510146
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5425739/
Abstract

Chromatin plays an important role in gene transcription control, cell cycle progression, recombination, DNA replication and repair. The fundamental unit of chromatin, the nucleosome, is formed by a DNA duplex wrapped around an octamer of histones. Histones are susceptible to various post-translational modifications, covalent alterations that change the chromatin status. Lysine methylation is one of the major post-translational modifications involved in the regulation of chromatin function. The PWWP domain is a member of the Royal superfamily that functions as a chromatin methylation reader by recognizing both DNA and histone methylated lysines. The PWWP domain three-dimensional structure is based on an N-terminal hydrophobic β-barrel responsible for histone methyl-lysine binding, and a C-terminal α-helical domain. In this review, we set out to discuss the most recent literature on PWWP domains, focusing on their structural features and the mechanisms by which they specifically recognize DNA and histone methylated lysines at the level of the nucleosome.

摘要

染色质在基因转录调控、细胞周期进程、重组、DNA复制和修复中发挥着重要作用。染色质的基本单位核小体由缠绕在组蛋白八聚体周围的DNA双链形成。组蛋白易受各种翻译后修饰的影响,这些共价改变会改变染色质状态。赖氨酸甲基化是参与染色质功能调控的主要翻译后修饰之一。PWWP结构域是皇家超家族的成员之一,通过识别DNA和组蛋白甲基化赖氨酸发挥染色质甲基化阅读器的作用。PWWP结构域的三维结构基于负责结合组蛋白甲基赖氨酸的N端疏水β桶和C端α螺旋结构域。在本综述中,我们着手讨论关于PWWP结构域的最新文献,重点关注其结构特征以及它们在核小体水平特异性识别DNA和组蛋白甲基化赖氨酸的机制。