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TWIST1发生R154P点突变后TWIST1/E12复合物二聚化的失稳:一种计算机模拟方法

Destabilization of the TWIST1/E12 complex dimerization following the R154P point-mutation of TWIST1: an in silico approach.

作者信息

Bouard Charlotte, Terreux Raphael, Tissier Agnès, Jacqueroud Laurent, Vigneron Arnaud, Ansieau Stéphane, Puisieux Alain, Payen Léa

机构信息

Inserm UMR-S1052, Centre de Recherche en Cancérologie de Lyon, Lyon, 69373, France.

CNRS UMR5286, Centre de Recherche en Cancérologie de Lyon, Lyon, 69373, France.

出版信息

BMC Struct Biol. 2017 May 18;17(1):6. doi: 10.1186/s12900-017-0076-x.

DOI:10.1186/s12900-017-0076-x
PMID:28521820
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5437649/
Abstract

BACKGROUND

The bHLH transcription factor TWIST1 plays a key role in the embryonic development and in tumorigenesis. Some loss-of-function mutations of the TWIST1 gene have been shown to cause an autosomal dominant craniosynostosis, known as the Saethre-Chotzen syndrome (SCS). Although the functional impacts of many TWIST1 mutations have been experimentally reported, little is known on the molecular mechanisms underlying their loss-of-function. In a previous study, we highlighted the predictive value of in silico molecular dynamics (MD) simulations in deciphering the molecular function of TWIST1 residues.

RESULTS

Here, since the substitution of the arginine 154 amino acid by a glycine residue (R154G) is responsible for the SCS phenotype and the substitution of arginine 154 by a proline experimentally decreases the dimerizing ability of TWIST1, we investigated the molecular impact of this point mutation using MD approaches. Consistently, MD simulations highlighted a clear decrease in the stability of the α-helix during the dimerization of the mutated R154P TWIST1/E12 dimer compared to the wild-type TE complex, which was further confirmed in vitro using immunoassays.

CONCLUSIONS

Our study demonstrates that MD simulations provide a structural explanation for the loss-of-function associated with the SCS TWIST1 mutation and provides a proof of concept of the predictive value of these MD simulations. This in silico methodology could be used to determine reliable pharmacophore sites, leading to the application of docking approaches in order to identify specific inhibitors of TWIST1 complexes.

摘要

背景

bHLH转录因子TWIST1在胚胎发育和肿瘤发生中起关键作用。TWIST1基因的一些功能丧失突变已被证明会导致常染色体显性颅缝早闭,即赛特勒-乔岑综合征(SCS)。尽管许多TWIST1突变的功能影响已通过实验报道,但对其功能丧失的分子机制知之甚少。在先前的一项研究中,我们强调了计算机模拟分子动力学(MD)模拟在解读TWIST1残基分子功能方面的预测价值。

结果

在此,由于甘氨酸残基取代精氨酸154氨基酸(R154G)导致SCS表型,且实验证明脯氨酸取代精氨酸154会降低TWIST1的二聚化能力,我们使用MD方法研究了该点突变的分子影响。一致地,MD模拟突出显示,与野生型TE复合物相比,突变型R154P TWIST1/E12二聚体在二聚化过程中α螺旋的稳定性明显降低,这在体外通过免疫测定得到了进一步证实。

结论

我们的研究表明,MD模拟为与SCS TWIST1突变相关的功能丧失提供了结构解释,并证明了这些MD模拟的预测价值。这种计算机方法可用于确定可靠的药效团位点,从而应用对接方法来识别TWIST1复合物的特异性抑制剂。

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The Heterodimeric TWIST1-E12 Complex Drives the Oncogenic Potential of TWIST1 in Human Mammary Epithelial Cells.异二聚体TWIST1-E12复合物驱动TWIST1在人乳腺上皮细胞中的致癌潜能。
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Deciphering the molecular mechanisms underlying the binding of the TWIST1/E12 complex to regulatory E-box sequences.解析TWIST1/E12复合物与调控性E盒序列结合背后的分子机制。
Nucleic Acids Res. 2016 Jun 20;44(11):5470-89. doi: 10.1093/nar/gkw334. Epub 2016 May 5.
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基于简化氨基酸集构建的乳清酸磷酸核糖基转移酶三维结构的分子动力学模拟
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J Biomol Struct Dyn. 2014;32(2):226-41. doi: 10.1080/07391102.2012.762722. Epub 2013 Mar 25.
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Computational modeling of the bHLH domain of the transcription factor TWIST1 and R118C, S144R and K145E mutants.TWIST1 转录因子 bHLH 结构域及其 R118C、S144R 和 K145E 突变体的计算建模。
BMC Bioinformatics. 2012 Jul 28;13:184. doi: 10.1186/1471-2105-13-184.
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