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LspC3-41I 限制修饰系统是球形赖氨酸芽孢杆菌 C3-41 基因操作的主要决定因素。

The LspC3-41I restriction-modification system is the major determinant for genetic manipulations of Lysinibacillus sphaericus C3-41.

作者信息

Fu Pan, Ge Yong, Wu Yiming, Zhao Ni, Yuan Zhiming, Hu Xiaomin

机构信息

Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, 430071, China.

University of Chinese Academy of Sciences, Beijing, 100039, China.

出版信息

BMC Microbiol. 2017 May 19;17(1):116. doi: 10.1186/s12866-017-1014-6.

Abstract

BACKGROUND

Lysinibacillus sphaericus has been widely used in integrated mosquito control program and it is one of the minority bacterial species unable to metabolize carbohydrates. In consideration of the high genetic conservation at genomic level and difficulty of genetic horizontal transfer, it is hypothesized that effective restriction-modification (R-M) systems existed in mosquitocidal L. sphaericus.

RESULTS

In this study, six type II R-M systems including LspC3-41I were predicted in L. sphaericus C3-41 genome. It was found that the cell free extracts (CFE) from this strain shown similar restriction and methylation activity on exogenous Bacillus/Escherichia coli shuttle vector pBU4 as the HaeIII, which is an isoschizomer of BspRI. The Bsph_0498 (encoding the predicted LspC3-41IR) knockout mutant Δ0498 and the complement strain RC0498 were constructed. It was found that the unmethylated pBU4 can be digested by the CFE of C3-41 and RC0498, but not by that of Δ0498. Furthermore, the exogenous plasmid pBU4 can be transformed at very high efficacy into Δ0498, low efficacy into RC0498, but no transformation into C3-41, indicating that LspC3-41I might be a major determinant for the genetic restriction barrier of strain C3-41. Besides, lspC3-41IR and lspC3-41IM genes are detected in other two strains besides C3-41 of the tested 16 L. sphaericus strains, which all belonging to serotype H5 and MLST sequence type (ST) 1. Furthermore, the three strains are not horizontal transferred, and this restriction could be overcome by in vitro methylation either by the host CFE or by commercial methytransferase M. HaeIII. The results provide an insight to further study the genetic restriction, modification and evolution of mosquitocidal L. sphaericus, also a theoretical basis and a method for the genetic manipulations of L. sphaericus.

CONCLUSIONS

LspC3-41I is identified as the major determinant for the restriction barrier of L. sphaericus C3-41. Only three strains of the tested 16 L. sphaericus strains, which all belonging to serotype H5 and ST1 by MLST scheme, contain LspC3-41I system. Two different methods can be used to overcome the restriction barrier of the three isolates to get transformants efficiently: 1) to methylate plasmid DNA prior to the electroporation; and 2) to delete the major restriction endonuclease encoding gene lspC3-41IR.

摘要

背景

球形赖氨酸芽孢杆菌已广泛应用于综合蚊虫控制项目,它是少数不能代谢碳水化合物的细菌物种之一。鉴于其基因组水平的高度遗传保守性以及基因水平转移的困难,推测杀蚊球形赖氨酸芽孢杆菌中存在有效的限制修饰(R-M)系统。

结果

在本研究中,在球形赖氨酸芽孢杆菌C3-41基因组中预测到包括LspC3-41I在内的六种II型R-M系统。发现该菌株的无细胞提取物(CFE)对外源芽孢杆菌/大肠杆菌穿梭载体pBU4表现出与HaeIII相似的限制和甲基化活性,HaeIII是BspRI的同裂酶。构建了Bsph_0498(编码预测的LspC3-41IR)敲除突变体Δ0498和互补菌株RC0498。发现未甲基化的pBU4可被C3-41和RC0498的CFE消化,但不能被Δ0498的CFE消化。此外,外源质粒pBU4可以以非常高的效率转化到Δ0498中,以低效率转化到RC0498中,但不能转化到C3-41中,这表明LspC3-41I可能是菌株C3-41遗传限制屏障的主要决定因素。此外,在测试的16株球形赖氨酸芽孢杆菌菌株中,除C3-41外的其他两株菌株中检测到lspC3-41IR和lspC3-41IM基因,这三株菌株均属于血清型H5和多位点序列类型(ST)1。此外,这三株菌株没有水平转移,并且这种限制可以通过宿主CFE或商业甲基转移酶M. HaeIII的体外甲基化来克服。这些结果为进一步研究杀蚊球形赖氨酸芽孢杆菌的遗传限制、修饰和进化提供了思路,也为球形赖氨酸芽孢杆菌的基因操作提供了理论基础和方法。

结论

LspC3-41I被确定为球形赖氨酸芽孢杆菌C3-41限制屏障的主要决定因素。在测试的16株球形赖氨酸芽孢杆菌菌株中,只有三株菌株含有LspC3-41I系统,这三株菌株均通过MLST方案属于血清型H5和ST1。可以使用两种不同的方法来克服这三株分离株的限制屏障以高效获得转化体:1)在电穿孔前对质粒DNA进行甲基化;2)删除主要限制内切酶编码基因lspC3-41IR。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28d4/5437673/3127b405bae5/12866_2017_1014_Fig1_HTML.jpg

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