Zhang Zhicheng, Dai Wei, Dai Dingzhen
Department of Animal Science and Technology, Jinling Institute of Technology, Nanjing, China.
The State Key Laboratory of Bioelectronics, Southeast University, Nanjing, China.
Comput Biol Chem. 2017 Aug;69:10-18. doi: 10.1016/j.compbiolchem.2017.04.012. Epub 2017 May 6.
The torque teno virus (TTV) is a recently discovered DNA virus that has been detected in many different hosts, including humans, livestock and poultry. To date, there is no report of pigeon TTV (PTTV) from anywhere in the world. To investigate the distribution of PTTV in pigeons from the eastern Chinese province of Jiangsu and characterize their genomes, we employed PCR to detect PTTV in 144 samples collected from 6 pigeon plants in Jiangsu province, amplify complete genomes from representative samples and analyze genetic characteristics using bioinformatics. The results demonstrated that 71.5% (103/144) of samples were PTTV positive. The rate of sequence homology among the six PTTV complete genomes obtained from Jiangsu province ranged from 99.7% to 100%. Phylogenetic analysis suggested that PTTV genomes had a high degree of genetic similarity and were similar to chicken anemia virus that also had poultry as a host. Although with the same host, PTTV shared distant relationship with PiCV in both complete genome, Rep and Cap genes. The results of this study provided evidence that PTTV could be detected in Chinese pigeons at a high level, the evolutionary process of complete genome, Rep and Cap genes of Anelloviridae family had obvious divergence.
细小病毒(TTV)是一种最近发现的DNA病毒,已在包括人类、家畜和家禽在内的许多不同宿主中被检测到。迄今为止,世界上任何地方都没有关于鸽细小病毒(PTTV)的报道。为了调查PTTV在中国东部江苏省鸽子中的分布情况并对其基因组进行特征分析,我们采用聚合酶链反应(PCR)对从江苏省6家鸽场采集的144份样本进行PTTV检测,从代表性样本中扩增完整基因组,并使用生物信息学分析遗传特征。结果表明,71.5%(103/144)的样本PTTV呈阳性。从江苏省获得的6个PTTV完整基因组之间的序列同源率在99.7%至100%之间。系统发育分析表明,PTTV基因组具有高度的遗传相似性,并且与同样以家禽为宿主的鸡贫血病毒相似。尽管宿主相同,但PTTV在完整基因组、Rep和Cap基因方面与鸽圆环病毒(PiCV)的关系较远。本研究结果提供了证据,表明在中国鸽子中可以高水平检测到PTTV,圆环病毒科完整基因组、Rep和Cap基因的进化过程存在明显差异。